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Items: 1 to 20 of 69

1.

Continued evolution of highly pathogenic avian influenza A (H5N1): updated nomenclature.

WHO/OIE/FAO H5N1 Evolution Working Group.

Influenza Other Respir Viruses. 2012 Jan;6(1):1-5. doi: 10.1111/j.1750-2659.2011.00298.x. Epub 2011 Oct 29.

2.

MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S.

Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4.

3.

SeqMaT: A sequence manipulation tool for phylogenetic analysis.

Attaluri PK, Christman MC, Chen Z, Lu G.

Bioinformation. 2011 Feb 7;5(9):400-1.

4.

Pandemic (H1N1) 2009 virus revisited: an evolutionary retrospective.

Christman MC, Kedwaii A, Xu J, Donis RO, Lu G.

Infect Genet Evol. 2011 Jul;11(5):803-11. doi: 10.1016/j.meegid.2011.02.021. Epub 2011 Mar 5. Review.

5.

The emergence of pandemic influenza viruses.

Guan Y, Vijaykrishna D, Bahl J, Zhu H, Wang J, Smith GJ.

Protein Cell. 2010 Jan;1(1):9-13. doi: 10.1007/s13238-010-0008-z. Epub 2010 Feb 7. Review.

7.

RDP3: a flexible and fast computer program for analyzing recombination.

Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P.

Bioinformatics. 2010 Oct 1;26(19):2462-3. doi: 10.1093/bioinformatics/btq467. Epub 2010 Aug 26.

8.

Permissive secondary mutations enable the evolution of influenza oseltamivir resistance.

Bloom JD, Gong LI, Baltimore D.

Science. 2010 Jun 4;328(5983):1272-5. doi: 10.1126/science.1187816.

9.

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.

Abascal F, Zardoya R, Telford MJ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W7-13. doi: 10.1093/nar/gkq291. Epub 2010 Apr 30.

10.

Evolutionary dynamics of the N1 neuraminidases of the main lineages of influenza A viruses.

Fourment M, Wood JT, Gibbs AJ, Gibbs MJ.

Mol Phylogenet Evol. 2010 Aug;56(2):526-35. doi: 10.1016/j.ympev.2010.04.039. Epub 2010 Apr 29.

PMID:
20434570
11.

Identifying changes in selective constraints: host shifts in influenza.

Tamuri AU, Dos Reis M, Hay AJ, Goldstein RA.

PLoS Comput Biol. 2009 Nov;5(11):e1000564. doi: 10.1371/journal.pcbi.1000564. Epub 2009 Nov 13.

12.

Evolution in health and medicine Sackler colloquium: The comparative genomics of viral emergence.

Holmes EC.

Proc Natl Acad Sci U S A. 2010 Jan 26;107 Suppl 1:1742-6. doi: 10.1073/pnas.0906193106. Epub 2009 Oct 26.

13.

Dating the emergence of pandemic influenza viruses.

Smith GJ, Bahl J, Vijaykrishna D, Zhang J, Poon LL, Chen H, Webster RG, Peiris JS, Guan Y.

Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11709-12. doi: 10.1073/pnas.0904991106. Epub 2009 Jul 13.

14.

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic.

Smith GJ, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, Pybus OG, Ma SK, Cheung CL, Raghwani J, Bhatt S, Peiris JS, Guan Y, Rambaut A.

Nature. 2009 Jun 25;459(7250):1122-5. doi: 10.1038/nature08182.

PMID:
19516283
15.

Evolution of the M gene of the influenza A virus in different host species: large-scale sequence analysis.

Furuse Y, Suzuki A, Kamigaki T, Oshitani H.

Virol J. 2009 May 29;6:67. doi: 10.1186/1743-422X-6-67.

16.

Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans.

Garten RJ, Davis CT, Russell CA, Shu B, Lindstrom S, Balish A, Sessions WM, Xu X, Skepner E, Deyde V, Okomo-Adhiambo M, Gubareva L, Barnes J, Smith CB, Emery SL, Hillman MJ, Rivailler P, Smagala J, de Graaf M, Burke DF, Fouchier RA, Pappas C, Alpuche-Aranda CM, López-Gatell H, Olivera H, López I, Myers CA, Faix D, Blair PJ, Yu C, Keene KM, Dotson PD Jr, Boxrud D, Sambol AR, Abid SH, St George K, Bannerman T, Moore AL, Stringer DJ, Blevins P, Demmler-Harrison GJ, Ginsberg M, Kriner P, Waterman S, Smole S, Guevara HF, Belongia EA, Clark PA, Beatrice ST, Donis R, Katz J, Finelli L, Bridges CB, Shaw M, Jernigan DB, Uyeki TM, Smith DJ, Klimov AI, Cox NJ.

Science. 2009 Jul 10;325(5937):197-201. doi: 10.1126/science.1176225. Epub 2009 May 22.

17.

Multiple alignment of DNA sequences with MAFFT.

Katoh K, Asimenos G, Toh H.

Methods Mol Biol. 2009;537:39-64. doi: 10.1007/978-1-59745-251-9_3.

PMID:
19378139
18.

Panorama phylogenetic diversity and distribution of Type A influenza virus.

Liu S, Ji K, Chen J, Tai D, Jiang W, Hou G, Chen J, Li J, Huang B.

PLoS One. 2009;4(3):e5022. doi: 10.1371/journal.pone.0005022. Epub 2009 Mar 27.

19.

Evolutionary dynamics and emergence of panzootic H5N1 influenza viruses.

Vijaykrishna D, Bahl J, Riley S, Duan L, Zhang JX, Chen H, Peiris JS, Smith GJ, Guan Y.

PLoS Pathog. 2008 Sep 26;4(9):e1000161. doi: 10.1371/journal.ppat.1000161.

20.

Structural characterization of the 1918 influenza virus H1N1 neuraminidase.

Xu X, Zhu X, Dwek RA, Stevens J, Wilson IA.

J Virol. 2008 Nov;82(21):10493-501. doi: 10.1128/JVI.00959-08. Epub 2008 Aug 20.

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