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Items: 1 to 20 of 52

1.

Genome architectures revealed by tethered chromosome conformation capture and population-based modeling.

Kalhor R, Tjong H, Jayathilaka N, Alber F, Chen L.

Nat Biotechnol. 2011 Dec 25;30(1):90-8. doi: 10.1038/nbt.2057.

2.

Mutations and epimutations in the origin of cancer.

Peltomäki P.

Exp Cell Res. 2012 Feb 15;318(4):299-310. doi: 10.1016/j.yexcr.2011.12.001. Review.

PMID:
22182599
3.

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

Yaffe E, Tanay A.

Nat Genet. 2011 Oct 16;43(11):1059-65. doi: 10.1038/ng.947.

PMID:
22001755
4.

Neuron-specific impairment of inter-chromosomal pairing and transcription in a novel model of human 15q-duplication syndrome.

Meguro-Horike M, Yasui DH, Powell W, Schroeder DI, Oshimura M, Lasalle JM, Horike S.

Hum Mol Genet. 2011 Oct 1;20(19):3798-810. doi: 10.1093/hmg/ddr298.

5.

Variegated gene expression caused by cell-specific long-range DNA interactions.

Noordermeer D, de Wit E, Klous P, van de Werken H, Simonis M, Lopez-Jones M, Eussen B, de Klein A, Singer RH, de Laat W.

Nat Cell Biol. 2011 Jun 26;13(8):944-51. doi: 10.1038/ncb2278.

6.

Live-cell chromosome dynamics and outcome of X chromosome pairing events during ES cell differentiation.

Masui O, Bonnet I, Le Baccon P, Brito I, Pollex T, Murphy N, Hupé P, Barillot E, Belmont AS, Heard E.

Cell. 2011 Apr 29;145(3):447-58. doi: 10.1016/j.cell.2011.03.032.

7.

More forks on the road to replication stress recovery.

Allen C, Ashley AK, Hromas R, Nickoloff JA.

J Mol Cell Biol. 2011 Feb;3(1):4-12. doi: 10.1093/jmcb/mjq049. Review.

8.

Distance between homologous chromosomes results from chromosome positioning constraints.

Heride C, Ricoul M, Kiêu K, von Hase J, Guillemot V, Cremer C, Dubrana K, Sabatier L.

J Cell Sci. 2010 Dec 1;123(Pt 23):4063-75. doi: 10.1242/jcs.066498.

9.

A non-coding RNA within the Rasgrf1 locus in mouse is imprinted and regulated by its homologous chromosome in trans.

Brideau CM, Kauppinen KP, Holmes R, Soloway PD.

PLoS One. 2010 Nov 2;5(11):e13784. doi: 10.1371/journal.pone.0013784.

10.

Regulation of homologous recombination in eukaryotes.

Heyer WD, Ehmsen KT, Liu J.

Annu Rev Genet. 2010;44:113-39. doi: 10.1146/annurev-genet-051710-150955. Review.

11.

The transcriptional interactome: gene expression in 3D.

Schoenfelder S, Clay I, Fraser P.

Curr Opin Genet Dev. 2010 Apr;20(2):127-33. doi: 10.1016/j.gde.2010.02.002. Review.

PMID:
20211559
12.

Chromosome conformation capture.

Cope NF, Fraser P.

Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5137. doi: 10.1101/pdb.prot5137. No abstract available.

PMID:
20147067
13.

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells.

Schoenfelder S, Sexton T, Chakalova L, Cope NF, Horton A, Andrews S, Kurukuti S, Mitchell JA, Umlauf D, Dimitrova DS, Eskiw CH, Luo Y, Wei CL, Ruan Y, Bieker JJ, Fraser P.

Nat Genet. 2010 Jan;42(1):53-61. doi: 10.1038/ng.496.

14.

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J.

Science. 2009 Oct 9;326(5950):289-93. doi: 10.1126/science.1181369.

15.

RAG-1 and ATM coordinate monoallelic recombination and nuclear positioning of immunoglobulin loci.

Hewitt SL, Yin B, Ji Y, Chaumeil J, Marszalek K, Tenthorey J, Salvagiotto G, Steinel N, Ramsey LB, Ghysdael J, Farrar MA, Sleckman BP, Schatz DG, Busslinger M, Bassing CH, Skok JA.

Nat Immunol. 2009 Jun;10(6):655-64. doi: 10.1038/ni.1735. Erratum in: Nat Immunol. 2010 Mar;11(4):355-6. Nat Immunol. 2009 Sep;10(9):1034. Nat Immunol. 2009 Jun;10(6). doi: 10.1038/ni.1735.

16.

The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing.

Redrup L, Branco MR, Perdeaux ER, Krueger C, Lewis A, Santos F, Nagano T, Cobb BS, Fraser P, Reik W.

Development. 2009 Feb;136(4):525-30. doi: 10.1242/dev.031328.

17.

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation.

Pandey RR, Mondal T, Mohammad F, Enroth S, Redrup L, Komorowski J, Nagano T, Mancini-Dinardo D, Kanduri C.

Mol Cell. 2008 Oct 24;32(2):232-46. doi: 10.1016/j.molcel.2008.08.022.

18.

Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos.

Terranova R, Yokobayashi S, Stadler MB, Otte AP, van Lohuizen M, Orkin SH, Peters AH.

Dev Cell. 2008 Nov;15(5):668-79. doi: 10.1016/j.devcel.2008.08.015.

19.

Somatic pairing of chromosome 19 in renal oncocytoma is associated with deregulated EGLN2-mediated [corrected] oxygen-sensing response.

Koeman JM, Russell RC, Tan MH, Petillo D, Westphal M, Koelzer K, Metcalf JL, Zhang Z, Matsuda D, Dykema KJ, Houseman HL, Kort EJ, Furge LL, Kahnoski RJ, Richard S, Vieillefond A, Swiatek PJ, Teh BT, Ohh M, Furge KA.

PLoS Genet. 2008 Sep 5;4(9):e1000176. doi: 10.1371/journal.pgen.1000176. Erratum in: PLoS Genet. 2008 Jul;4(7). doi: 10.1371/annotation/7f57058f-cc02-45a6-bfab-a835619e3916.

20.

The role of specialized transcription factories in chromosome pairing.

Xu M, Cook PR.

Biochim Biophys Acta. 2008 Nov;1783(11):2155-60. doi: 10.1016/j.bbamcr.2008.07.013. Review.

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