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Items: 1 to 20 of 29

1.

Recent advances in clustering methods for protein interaction networks.

Wang J, Li M, Deng Y, Pan Y.

BMC Genomics. 2010 Dec 1;11 Suppl 3:S10. doi: 10.1186/1471-2164-11-S3-S10.

2.

Identifying protein complexes from interaction networks based on clique percolation and distance restriction.

Wang J, Liu B, Li M, Pan Y.

BMC Genomics. 2010 Nov 2;11 Suppl 2:S10. doi: 10.1186/1471-2164-11-S2-S10.

3.

A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks.

Wang J, Li M, Chen J, Pan Y.

IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):607-20. doi: 10.1109/TCBB.2010.75.

PMID:
20733244
4.

Identifying the overlapping complexes in protein interaction networks.

Li M, Wang J, Chen J, Cai Z, Chen G.

Int J Data Min Bioinform. 2010;4(1):91-108.

PMID:
20376924
5.

Computational approaches for detecting protein complexes from protein interaction networks: a survey.

Li X, Wu M, Kwoh CK, Ng SK.

BMC Genomics. 2010 Feb 10;11 Suppl 1:S3. doi: 10.1186/1471-2164-11-S1-S3.

6.

Protein complex prediction based on simultaneous protein interaction network.

Jung SH, Hyun B, Jang WH, Hur HY, Han DS.

Bioinformatics. 2010 Feb 1;26(3):385-91. doi: 10.1093/bioinformatics/btp668.

PMID:
19965885
7.

A core-attachment based method to detect protein complexes in PPI networks.

Wu M, Li X, Kwoh CK, Ng SK.

BMC Bioinformatics. 2009 Jun 2;10:169. doi: 10.1186/1471-2105-10-169.

8.

Complex discovery from weighted PPI networks.

Liu G, Wong L, Chua HN.

Bioinformatics. 2009 Aug 1;25(15):1891-7. doi: 10.1093/bioinformatics/btp311.

PMID:
19435747
9.

Core and periphery structures in protein interaction networks.

Luo F, Li B, Wan XF, Scheuermann RH.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S8. doi: 10.1186/1471-2105-10-S4-S8.

10.

Clustering algorithms for detecting functional modules in protein interaction networks.

Gao L, Sun PG, Song J.

J Bioinform Comput Biol. 2009 Feb;7(1):217-42.

PMID:
19226668
11.

Predicting protein complexes from PPI data: a core-attachment approach.

Leung HC, Xiang Q, Yiu SM, Chin FY.

J Comput Biol. 2009 Feb;16(2):133-44. doi: 10.1089/cmb.2008.01TT.

PMID:
19193141
12.

Modifying the DPClus algorithm for identifying protein complexes based on new topological structures.

Li M, Chen JE, Wang JX, Hu B, Chen G.

BMC Bioinformatics. 2008 Sep 25;9:398. doi: 10.1186/1471-2105-9-398.

13.

Semantic integration to identify overlapping functional modules in protein interaction networks.

Cho YR, Hwang W, Ramanathan M, Zhang A.

BMC Bioinformatics. 2007 Jul 24;8:265.

14.

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.

BMC Bioinformatics. 2006 Apr 14;7:207.

15.

CFinder: locating cliques and overlapping modules in biological networks.

Adamcsek B, Palla G, Farkas IJ, Derényi I, Vicsek T.

Bioinformatics. 2006 Apr 15;22(8):1021-3.

PMID:
16473872
16.

Proteome survey reveals modularity of the yeast cell machinery.

Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dümpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Schelder M, Schirle M, Remor M, Rudi T, Hooper S, Bauer A, Bouwmeester T, Casari G, Drewes G, Neubauer G, Rick JM, Kuster B, Bork P, Russell RB, Superti-Furga G.

Nature. 2006 Mar 30;440(7084):631-6.

PMID:
16429126
17.

Uncovering the overlapping community structure of complex networks in nature and society.

Palla G, Derényi I, Farkas I, Vicsek T.

Nature. 2005 Jun 9;435(7043):814-8.

PMID:
15944704
18.

Clustering proteins from interaction networks for the prediction of cellular functions.

Brun C, Herrmann C, Guénoche A.

BMC Bioinformatics. 2004 Jul 13;5:95.

19.

Defining and identifying communities in networks.

Radicchi F, Castellano C, Cecconi F, Loreto V, Parisi D.

Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):2658-63.

20.

MIPS: analysis and annotation of proteins from whole genomes.

Mewes HW, Amid C, Arnold R, Frishman D, Güldener U, Mannhaupt G, Münsterkötter M, Pagel P, Strack N, Stümpflen V, Warfsmann J, Ruepp A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D41-4.

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