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The PHD and chromo domains regulate the ATPase activity of the human chromatin remodeler CHD4.

Watson AA, Mahajan P, Mertens HD, Deery MJ, Zhang W, Pham P, Du X, Bartke T, Zhang W, Edlich C, Berridge G, Chen Y, Burgess-Brown NA, Kouzarides T, Wiechens N, Owen-Hughes T, Svergun DI, Gileadi O, Laue ED.

J Mol Biol. 2012 Sep 7;422(1):3-17. doi: 10.1016/j.jmb.2012.04.031. Epub 2012 May 7.


Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression.

Musselman CA, Ramírez J, Sims JK, Mansfield RE, Oliver SS, Denu JM, Mackay JP, Wade PA, Hagman J, Kutateladze TG.

Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):787-92. doi: 10.1073/pnas.1113655109. Epub 2012 Jan 3.


Plant homeodomain (PHD) fingers of CHD4 are histone H3-binding modules with preference for unmodified H3K4 and methylated H3K9.

Mansfield RE, Musselman CA, Kwan AH, Oliver SS, Garske AL, Davrazou F, Denu JM, Kutateladze TG, Mackay JP.

J Biol Chem. 2011 Apr 1;286(13):11779-91. doi: 10.1074/jbc.M110.208207. Epub 2011 Jan 28.


The chromodomains of the Chd1 chromatin remodeler regulate DNA access to the ATPase motor.

Hauk G, McKnight JN, Nodelman IM, Bowman GD.

Mol Cell. 2010 Sep 10;39(5):711-23. doi: 10.1016/j.molcel.2010.08.012.


Ageing-related chromatin defects through loss of the NURD complex.

Pegoraro G, Kubben N, Wickert U, Göhler H, Hoffmann K, Misteli T.

Nat Cell Biol. 2009 Oct;11(10):1261-7. doi: 10.1038/ncb1971. Epub 2009 Sep 6.


Opposing effects of SWI/SNF and Mi-2/NuRD chromatin remodeling complexes on epigenetic reprogramming by EBF and Pax5.

Gao H, Lukin K, Ramírez J, Fields S, Lopez D, Hagman J.

Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11258-63. doi: 10.1073/pnas.0809485106. Epub 2009 Jun 19.


Molecular implications of evolutionary differences in CHD double chromodomains.

Flanagan JF, Blus BJ, Kim D, Clines KL, Rastinejad F, Khorasanizadeh S.

J Mol Biol. 2007 Jun 1;369(2):334-42. Epub 2007 Mar 19.


The Chd family of chromatin remodelers.

Marfella CG, Imbalzano AN.

Mutat Res. 2007 May 1;618(1-2):30-40. Epub 2007 Jan 21. Review.


Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36.

Shi X, Kachirskaia I, Walter KL, Kuo JH, Lake A, Davrazou F, Chan SM, Martin DG, Fingerman IM, Briggs SD, Howe L, Utz PJ, Kutateladze TG, Lugovskoy AA, Bedford MT, Gozani O.

J Biol Chem. 2007 Jan 26;282(4):2450-5. Epub 2006 Dec 1.


Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2.

Peña PV, Davrazou F, Shi X, Walter KL, Verkhusha VV, Gozani O, Zhao R, Kutateladze TG.

Nature. 2006 Jul 6;442(7098):100-3. Epub 2006 May 21.


Double chromodomains cooperate to recognize the methylated histone H3 tail.

Flanagan JF, Mi LZ, Chruszcz M, Cymborowski M, Clines KL, Kim Y, Minor W, Rastinejad F, Khorasanizadeh S.

Nature. 2005 Dec 22;438(7071):1181-5.


The PHD finger, a nuclear protein-interaction domain.

Bienz M.

Trends Biochem Sci. 2006 Jan;31(1):35-40. Epub 2005 Nov 16. Review.


Global rigid body modeling of macromolecular complexes against small-angle scattering data.

Petoukhov MV, Svergun DI.

Biophys J. 2005 Aug;89(2):1237-50. Epub 2005 May 27.


Mi-2/NuRD: multiple complexes for many purposes.

Bowen NJ, Fujita N, Kajita M, Wade PA.

Biochim Biophys Acta. 2004 Mar 15;1677(1-3):52-7. Review.


Enzymatic mechanism of RNA translocation in double-stranded RNA bacteriophages.

Lísal J, Kainov DE, Bamford DH, Thomas GJ Jr, Tuma R.

J Biol Chem. 2004 Jan 9;279(2):1343-50. Epub 2003 Oct 6.


The dMi-2 chromodomains are DNA binding modules important for ATP-dependent nucleosome mobilization.

Bouazoune K, Mitterweger A, Längst G, Imhof A, Akhtar A, Becker PB, Brehm A.

EMBO J. 2002 May 15;21(10):2430-40.


Set9, a novel histone H3 methyltransferase that facilitates transcription by precluding histone tail modifications required for heterochromatin formation.

Nishioka K, Chuikov S, Sarma K, Erdjument-Bromage H, Allis CD, Tempst P, Reinberg D.

Genes Dev. 2002 Feb 15;16(4):479-89.


Chromodomains are protein-RNA interaction modules.

Akhtar A, Zink D, Becker PB.

Nature. 2000 Sep 21;407(6802):405-9.


Preparation of nucleosome core particle from recombinant histones.

Luger K, Rechsteiner TJ, Richmond TJ.

Methods Enzymol. 1999;304:3-19. No abstract available.


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