Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 16

1.

NIH Image to ImageJ: 25 years of image analysis.

Schneider CA, Rasband WS, Eliceiri KW.

Nat Methods. 2012 Jul;9(7):671-5.

2.

A call for bioimaging software usability.

Carpenter AE, Kamentsky L, Eliceiri KW.

Nat Methods. 2012 Jun 28;9(7):666-70. doi: 10.1038/nmeth.2073.

3.

Annotated high-throughput microscopy image sets for validation.

Ljosa V, Sokolnicki KL, Carpenter AE.

Nat Methods. 2012 Jun 28;9(7):637. doi: 10.1038/nmeth.2083. No abstract available. Erratum in: Nat Methods. 2013 May;10(5):445.

4.

The case for open computer programs.

Ince DC, Hatton L, Graham-Cumming J.

Nature. 2012 Feb 22;482(7386):485-8. doi: 10.1038/nature10836.

PMID:
22358837
5.

Improving validation practices in "omics" research.

Ioannidis JP, Khoury MJ.

Science. 2011 Dec 2;334(6060):1230-2. doi: 10.1126/science.1211811.

PMID:
22144616
6.

Reproducible research in computational science.

Peng RD.

Science. 2011 Dec 2;334(6060):1226-7. doi: 10.1126/science.1213847.

7.

Persistence and availability of Web services in computational biology.

Schultheiss SJ, Münch MC, Andreeva GD, Rätsch G.

PLoS One. 2011;6(9):e24914. doi: 10.1371/journal.pone.0024914. Epub 2011 Sep 22.

8.

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Kamentsky L, Jones TR, Fraser A, Bray MA, Logan DJ, Madden KL, Ljosa V, Rueden C, Eliceiri KW, Carpenter AE.

Bioinformatics. 2011 Apr 15;27(8):1179-80. doi: 10.1093/bioinformatics/btr095. Epub 2011 Feb 23.

9.

Metadata matters: access to image data in the real world.

Linkert M, Rueden CT, Allan C, Burel JM, Moore W, Patterson A, Loranger B, Moore J, Neves C, Macdonald D, Tarkowska A, Sticco C, Hill E, Rossner M, Eliceiri KW, Swedlow JR.

J Cell Biol. 2010 May 31;189(5):777-82. doi: 10.1083/jcb.201004104.

10.

Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images.

Ruusuvuori P, Aijö T, Chowdhury S, Garmendia-Torres C, Selinummi J, Birbaumer M, Dudley AM, Pelkmans L, Yli-Harja O.

BMC Bioinformatics. 2010 May 13;11:248. doi: 10.1186/1471-2105-11-248.

11.

Computer science. Accessible reproducible research.

Mesirov JP.

Science. 2010 Jan 22;327(5964):415-6. doi: 10.1126/science.1179653. No abstract available.

12.

Better bioinformatics through usability analysis.

Bolchini D, Finkelstein A, Perrone V, Nagl S.

Bioinformatics. 2009 Feb 1;25(3):406-12. doi: 10.1093/bioinformatics/btn633. Epub 2008 Dec 9.

PMID:
19073592
13.

Computational biology resources lack persistence and usability.

Veretnik S, Fink JL, Bourne PE.

PLoS Comput Biol. 2008 Jul 18;4(7):e1000136. doi: 10.1371/journal.pcbi.1000136. No abstract available.

14.

Scientific software development is not an oxymoron.

Baxter SM, Day SW, Fetrow JS, Reisinger SJ.

PLoS Comput Biol. 2006 Sep 8;2(9):e87. No abstract available.

15.

The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging.

Goldberg IG, Allan C, Burel JM, Creager D, Falconi A, Hochheiser H, Johnston J, Mellen J, Sorger PK, Swedlow JR.

Genome Biol. 2005;6(5):R47. Epub 2005 May 3.

16.

Improving software environments through usability and interaction design.

Rimmer J.

J Audiov Media Med. 2004 Mar;27(1):6-10. Review.

PMID:
15203694

Supplemental Content

Support Center