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Items: 1 to 20 of 33

1.

Differential network biology.

Ideker T, Krogan NJ.

Mol Syst Biol. 2012 Jan 17;8:565. doi: 10.1038/msb.2011.99. Review.

2.

Quantitative maps of genetic interactions in yeast - comparative evaluation and integrative analysis.

Lindén RO, Eronen VP, Aittokallio T.

BMC Syst Biol. 2011 Mar 24;5:45. doi: 10.1186/1752-0509-5-45.

3.

Mapping of signaling networks through synthetic genetic interaction analysis by RNAi.

Horn T, Sandmann T, Fischer B, Axelsson E, Huber W, Boutros M.

Nat Methods. 2011 Apr;8(4):341-6. doi: 10.1038/nmeth.1581. Epub 2011 Mar 6.

PMID:
21378980
4.

Rewiring of genetic networks in response to DNA damage.

Bandyopadhyay S, Mehta M, Kuo D, Sung MK, Chuang R, Jaehnig EJ, Bodenmiller B, Licon K, Copeland W, Shales M, Fiedler D, Dutkowski J, Guénolé A, van Attikum H, Shokat KM, Kolodner RD, Huh WK, Aebersold R, Keogh MC, Krogan NJ, Ideker T.

Science. 2010 Dec 3;330(6009):1385-9. doi: 10.1126/science.1195618. Erratum in: Science. 2011 Jan 21;331(6015):284.

5.

Quantitative analysis of fitness and genetic interactions in yeast on a genome scale.

Baryshnikova A, Costanzo M, Kim Y, Ding H, Koh J, Toufighi K, Youn JY, Ou J, San Luis BJ, Bandyopadhyay S, Hibbs M, Hess D, Gingras AC, Bader GD, Troyanskaya OG, Brown GW, Andrews B, Boone C, Myers CL.

Nat Methods. 2010 Dec;7(12):1017-24. doi: 10.1038/nmeth.1534. Epub 2010 Nov 14.

6.

GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop.

Montojo J, Zuberi K, Rodriguez H, Kazi F, Wright G, Donaldson SL, Morris Q, Bader GD.

Bioinformatics. 2010 Nov 15;26(22):2927-8. doi: 10.1093/bioinformatics/btq562. Epub 2010 Oct 5.

7.

Identification of response-modulated genetic interactions by sensitivity-based epistatic analysis.

Batenchuk C, Tepliakova L, Kaern M.

BMC Genomics. 2010 Sep 10;11:493. doi: 10.1186/1471-2164-11-493.

8.

Systematic planning of genome-scale experiments in poorly studied species.

Guan Y, Dunham M, Caudy A, Troyanskaya O.

PLoS Comput Biol. 2010 Mar 5;6(3):e1000698. doi: 10.1371/journal.pcbi.1000698.

9.

The genetic landscape of a cell.

Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pál C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C.

Science. 2010 Jan 22;327(5964):425-31. doi: 10.1126/science.1180823.

10.

Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis.

Vizeacoumar FJ, van Dyk N, S Vizeacoumar F, Cheung V, Li J, Sydorskyy Y, Case N, Li Z, Datti A, Nislow C, Raught B, Zhang Z, Frey B, Bloom K, Boone C, Andrews BJ.

J Cell Biol. 2010 Jan 11;188(1):69-81. doi: 10.1083/jcb.200909013.

11.

Regulators of yeast endocytosis identified by systematic quantitative analysis.

Burston HE, Maldonado-Báez L, Davey M, Montpetit B, Schluter C, Wendland B, Conibear E.

J Cell Biol. 2009 Jun 15;185(6):1097-110. doi: 10.1083/jcb.200811116. Epub 2009 Jun 8.

12.

Q&A: epistasis.

Roth FP, Lipshitz HD, Andrews BJ.

J Biol. 2009;8(4):35. doi: 10.1186/jbiol144. Epub 2009 May 22. No abstract available.

13.

Maximal extraction of biological information from genetic interaction data.

Carter GW, Galas DJ, Galitski T.

PLoS Comput Biol. 2009 Apr;5(4):e1000347. doi: 10.1371/journal.pcbi.1000347. Epub 2009 Apr 3.

14.

Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum.

Jonikas MC, Collins SR, Denic V, Oh E, Quan EM, Schmid V, Weibezahn J, Schwappach B, Walter P, Weissman JS, Schuldiner M.

Science. 2009 Mar 27;323(5922):1693-7. doi: 10.1126/science.1167983.

15.

Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes.

Dixon SJ, Fedyshyn Y, Koh JL, Prasad TS, Chahwan C, Chua G, Toufighi K, Baryshnikova A, Hayles J, Hoe KL, Kim DU, Park HO, Myers CL, Pandey A, Durocher D, Andrews BJ, Boone C.

Proc Natl Acad Sci U S A. 2008 Oct 28;105(43):16653-8. doi: 10.1073/pnas.0806261105. Epub 2008 Oct 17.

16.

eSGA: E. coli synthetic genetic array analysis.

Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, Ali M, Venn P, Safavi-Naini A, Sourour N, Caron S, Choi JY, Laigle L, Nazarians-Armavil A, Deshpande A, Joe S, Datsenko KA, Yamamoto N, Andrews BJ, Boone C, Ding H, Sheikh B, Moreno-Hagelseib G, Greenblatt JF, Emili A.

Nat Methods. 2008 Sep;5(9):789-95. doi: 10.1038/nmeth.1239.

PMID:
18677321
17.

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function.

Mostafavi S, Ray D, Warde-Farley D, Grouios C, Morris Q.

Genome Biol. 2008;9 Suppl 1:S4. doi: 10.1186/gb-2008-9-s1-s4. Epub 2008 Jun 27.

18.

The chemical genomic portrait of yeast: uncovering a phenotype for all genes.

Hillenmeyer ME, Fung E, Wildenhain J, Pierce SE, Hoon S, Lee W, Proctor M, St Onge RP, Tyers M, Koller D, Altman RB, Davis RW, Nislow C, Giaever G.

Science. 2008 Apr 18;320(5874):362-5. doi: 10.1126/science.1150021.

19.

Defining genetic interaction.

Mani R, St Onge RP, Hartman JL 4th, Giaever G, Roth FP.

Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3461-6. doi: 10.1073/pnas.0712255105. Epub 2008 Feb 27.

20.

A global analysis of genetic interactions in Caenorhabditis elegans.

Byrne AB, Weirauch MT, Wong V, Koeva M, Dixon SJ, Stuart JM, Roy PJ.

J Biol. 2007;6(3):8. Epub 2007 Sep 26.

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