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Items: 1 to 20 of 42

1.

Zscan4 transiently reactivates early embryonic genes during the generation of induced pluripotent stem cells.

Hirata T, Amano T, Nakatake Y, Amano M, Piao Y, Hoang HG, Ko MS.

Sci Rep. 2012;2:208. doi: 10.1038/srep00208. Epub 2012 Jan 4.

2.

Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals.

Lynch VJ, Leclerc RD, May G, Wagner GP.

Nat Genet. 2011 Sep 25;43(11):1154-9. doi: 10.1038/ng.917.

PMID:
21946353
3.

Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A.

Macfarlan TS, Gifford WD, Agarwal S, Driscoll S, Lettieri K, Wang J, Andrews SE, Franco L, Rosenfeld MG, Ren B, Pfaff SL.

Genes Dev. 2011 Mar 15;25(6):594-607. doi: 10.1101/gad.2008511. Epub 2011 Feb 28.

4.

Differential expression analysis for sequence count data.

Anders S, Huber W.

Genome Biol. 2010;11(10):R106. doi: 10.1186/gb-2010-11-10-r106. Epub 2010 Oct 27.

5.

Transposable elements have rewired the core regulatory network of human embryonic stem cells.

Kunarso G, Chia NY, Jeyakani J, Hwang C, Lu X, Chan YS, Ng HH, Bourque G.

Nat Genet. 2010 Jul;42(7):631-4. doi: 10.1038/ng.600. Epub 2010 Jun 6.

PMID:
20526341
6.

Making the blastocyst: lessons from the mouse.

Cockburn K, Rossant J.

J Clin Invest. 2010 Apr;120(4):995-1003. doi: 10.1172/JCI41229. Epub 2010 Apr 1. Review.

7.

Zscan4 regulates telomere elongation and genomic stability in ES cells.

Zalzman M, Falco G, Sharova LV, Nishiyama A, Thomas M, Lee SL, Stagg CA, Hoang HG, Yang HT, Indig FE, Wersto RP, Ko MS.

Nature. 2010 Apr 8;464(7290):858-63. doi: 10.1038/nature08882. Epub 2010 Mar 24.

8.

Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal.

Niakan KK, Ji H, Maehr R, Vokes SA, Rodolfa KT, Sherwood RI, Yamaki M, Dimos JT, Chen AE, Melton DA, McMahon AP, Eggan K.

Genes Dev. 2010 Feb 1;24(3):312-26. doi: 10.1101/gad.1833510.

9.

KAP1 controls endogenous retroviruses in embryonic stem cells.

Rowe HM, Jakobsson J, Mesnard D, Rougemont J, Reynard S, Aktas T, Maillard PV, Layard-Liesching H, Verp S, Marquis J, Spitz F, Constam DB, Trono D.

Nature. 2010 Jan 14;463(7278):237-40. doi: 10.1038/nature08674.

PMID:
20075919
10.

G9a selectively represses a class of late-replicating genes at the nuclear periphery.

Yokochi T, Poduch K, Ryba T, Lu J, Hiratani I, Tachibana M, Shinkai Y, Gilbert DM.

Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19363-8. doi: 10.1073/pnas.0906142106. Epub 2009 Nov 4.

11.

Generation of human-induced pluripotent stem cells in the absence of exogenous Sox2.

Li W, Zhou H, Abujarour R, Zhu S, Young Joo J, Lin T, Hao E, Schöler HR, Hayek A, Ding S.

Stem Cells. 2009 Dec;27(12):2992-3000. doi: 10.1002/stem.240.

12.

Syncytin-A knockout mice demonstrate the critical role in placentation of a fusogenic, endogenous retrovirus-derived, envelope gene.

Dupressoir A, Vernochet C, Bawa O, Harper F, Pierron G, Opolon P, Heidmann T.

Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):12127-32. doi: 10.1073/pnas.0902925106. Epub 2009 Jun 29.

13.

Effect of trychostatin A treatment on gene expression in cloned mouse embryos.

Shao GB, Ding HM, Gao WL, Li SH, Wu CF, Xu YX, Liu HL.

Theriogenology. 2009 May;71(8):1245-52. doi: 10.1016/j.theriogenology.2009.01.004. Epub 2009 Feb 26.

PMID:
19246084
14.

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Huang da W, Sherman BT, Lempicki RA.

Nat Protoc. 2009;4(1):44-57. doi: 10.1038/nprot.2008.211.

15.

Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states.

Hayashi K, de Sousa Lopes SMC, Tang F, Lao K, Surani MA.

Cell Stem Cell. 2008 Oct 9;3(4):391-401. doi: 10.1016/j.stem.2008.07.027.

16.

The ground state of embryonic stem cell self-renewal.

Ying QL, Wray J, Nichols J, Batlle-Morera L, Doble B, Woodgett J, Cohen P, Smith A.

Nature. 2008 May 22;453(7194):519-23. doi: 10.1038/nature06968.

17.

Transposable elements and the evolution of regulatory networks.

Feschotte C.

Nat Rev Genet. 2008 May;9(5):397-405. doi: 10.1038/nrg2337. Review.

18.

Nanog safeguards pluripotency and mediates germline development.

Chambers I, Silva J, Colby D, Nichols J, Nijmeijer B, Robertson M, Vrana J, Jones K, Grotewold L, Smith A.

Nature. 2007 Dec 20;450(7173):1230-4.

PMID:
18097409
19.

Tead4 is required for specification of trophectoderm in pre-implantation mouse embryos.

Nishioka N, Yamamoto S, Kiyonari H, Sato H, Sawada A, Ota M, Nakao K, Sasaki H.

Mech Dev. 2008 Mar-Apr;125(3-4):270-83. Epub 2007 Nov 17.

20.

Murine endogenous retrovirus MuERV-L is the progenitor of the "orphan" epsilon viruslike particles of the early mouse embryo.

Ribet D, Louvet-Vallée S, Harper F, de Parseval N, Dewannieux M, Heidmann O, Pierron G, Maro B, Heidmann T.

J Virol. 2008 Feb;82(3):1622-5. Epub 2007 Nov 28.

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