Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 35

1.

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill.

Redmond MC, Valentine DL.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20292-7. doi: 10.1073/pnas.1108756108. Epub 2011 Oct 3.

2.

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume.

Lu Z, Deng Y, Van Nostrand JD, He Z, Voordeckers J, Zhou A, Lee YJ, Mason OU, Dubinsky EA, Chavarria KL, Tom LM, Fortney JL, Lamendella R, Jansson JK, D'haeseleer P, Hazen TC, Zhou J.

ISME J. 2012 Feb;6(2):451-60. doi: 10.1038/ismej.2011.91. Epub 2011 Aug 4.

3.

Composition and fate of gas and oil released to the water column during the Deepwater Horizon oil spill.

Reddy CM, Arey JS, Seewald JS, Sylva SP, Lemkau KL, Nelson RK, Carmichael CA, McIntyre CP, Fenwick J, Ventura GT, Van Mooy BA, Camilli R.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20229-34. doi: 10.1073/pnas.1101242108. Epub 2011 Jul 18.

4.

Microbial degradation of petroleum hydrocarbon contaminants: an overview.

Das N, Chandran P.

Biotechnol Res Int. 2011;2011:941810. doi: 10.4061/2011/941810. Epub 2010 Sep 13.

5.

A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico.

Kessler JD, Valentine DL, Redmond MC, Du M, Chan EW, Mendes SD, Quiroz EW, Villanueva CJ, Shusta SS, Werra LM, Yvon-Lewis SA, Weber TC.

Science. 2011 Jan 21;331(6015):312-5. doi: 10.1126/science.1199697. Epub 2011 Jan 6.

6.

Genomic and functional adaptation in surface ocean planktonic prokaryotes.

Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, Kim M, Johnson J, Montgomery R, Ferriera S, Beeson K, Williamson SJ, Tovchigrechko A, Allen AE, Zeigler LA, Sutton G, Eisenstadt E, Rogers YH, Friedman R, Frazier M, Venter JC.

Nature. 2010 Nov 4;468(7320):60-6. doi: 10.1038/nature09530.

PMID:
21048761
7.

Propane respiration jump-starts microbial response to a deep oil spill.

Valentine DL, Kessler JD, Redmond MC, Mendes SD, Heintz MB, Farwell C, Hu L, Kinnaman FS, Yvon-Lewis S, Du M, Chan EW, Garcia Tigreros F, Villanueva CJ.

Science. 2010 Oct 8;330(6001):208-11. doi: 10.1126/science.1196830. Epub 2010 Sep 16.

8.

Deep-sea oil plume enriches indigenous oil-degrading bacteria.

Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R, Sonnenthal EL, D'haeseleer P, Holman HY, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou J, Mason OU.

Science. 2010 Oct 8;330(6001):204-8. doi: 10.1126/science.1195979. Epub 2010 Aug 24.

9.

Tracking hydrocarbon plume transport and biodegradation at Deepwater Horizon.

Camilli R, Reddy CM, Yoerger DR, Van Mooy BA, Jakuba MV, Kinsey JC, McIntyre CP, Sylva SP, Maloney JV.

Science. 2010 Oct 8;330(6001):201-4. doi: 10.1126/science.1195223. Epub 2010 Aug 19.

10.

Search and clustering orders of magnitude faster than BLAST.

Edgar RC.

Bioinformatics. 2010 Oct 1;26(19):2460-1. doi: 10.1093/bioinformatics/btq461. Epub 2010 Aug 12.

PMID:
20709691
11.

Microbial communities acclimate to recurring changes in soil redox potential status.

DeAngelis KM, Silver WL, Thompson AW, Firestone MK.

Environ Microbiol. 2010 Dec;12(12):3137-49. doi: 10.1111/j.1462-2920.2010.02286.x.

PMID:
20629704
12.

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity.

He Z, Deng Y, Van Nostrand JD, Tu Q, Xu M, Hemme CL, Li X, Wu L, Gentry TJ, Yin Y, Liebich J, Hazen TC, Zhou J.

ISME J. 2010 Sep;4(9):1167-79. doi: 10.1038/ismej.2010.46. Epub 2010 Apr 29.

PMID:
20428223
13.

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R.

Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. No abstract available.

14.

Assembly algorithms for next-generation sequencing data.

Miller JR, Koren S, Sutton G.

Genomics. 2010 Jun;95(6):315-27. doi: 10.1016/j.ygeno.2010.03.001. Epub 2010 Mar 6. Review.

15.

Identifying biologically relevant differences between metagenomic communities.

Parks DH, Beiko RG.

Bioinformatics. 2010 Mar 15;26(6):715-21. doi: 10.1093/bioinformatics/btq041. Epub 2010 Feb 3.

PMID:
20130030
16.

Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community.

Allgaier M, Reddy A, Park JI, Ivanova N, D'haeseleer P, Lowry S, Sapra R, Hazen TC, Simmons BA, VanderGheynst JS, Hugenholtz P.

PLoS One. 2010 Jan 21;5(1):e8812. doi: 10.1371/journal.pone.0008812.

17.

PyNAST: a flexible tool for aligning sequences to a template alignment.

Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R.

Bioinformatics. 2010 Jan 15;26(2):266-7. doi: 10.1093/bioinformatics/btp636. Epub 2009 Nov 13.

18.

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates.

Kunin V, Engelbrektson A, Ochman H, Hugenholtz P.

Environ Microbiol. 2010 Jan;12(1):118-23. doi: 10.1111/j.1462-2920.2009.02051.x. Epub 2009 Aug 27.

PMID:
19725865
19.

Whole genome amplification and de novo assembly of single bacterial cells.

Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW.

PLoS One. 2009 Sep 2;4(9):e6864. doi: 10.1371/journal.pone.0006864.

20.

Identification of ancient remains through genomic sequencing.

Blow MJ, Zhang T, Woyke T, Speller CF, Krivoshapkin A, Yang DY, Derevianko A, Rubin EM.

Genome Res. 2008 Aug;18(8):1347-53. doi: 10.1101/gr.076091.108. Epub 2008 Apr 21. Erratum in: Genome Res. 2008 Nov;18(11):1859.

Supplemental Content

Support Center