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Items: 1 to 20 of 76

1.

Serratia symbiotica from the aphid Cinara cedri: a missing link from facultative to obligate insect endosymbiont.

Lamelas A, Gosalbes MJ, Manzano-Marín A, Peretó J, Moya A, Latorre A.

PLoS Genet. 2011 Nov;7(11):e1002357. doi: 10.1371/journal.pgen.1002357. Epub 2011 Nov 10.

2.

tRNAs marked with CCACCA are targeted for degradation.

Wilusz JE, Whipple JM, Phizicky EM, Sharp PA.

Science. 2011 Nov 11;334(6057):817-21. doi: 10.1126/science.1213671.

3.

Extreme genome reduction in symbiotic bacteria.

McCutcheon JP, Moran NA.

Nat Rev Microbiol. 2011 Nov 8;10(1):13-26. doi: 10.1038/nrmicro2670. Review.

PMID:
22064560
4.

Sequence conservation and functional constraint on intergenic spacers in reduced genomes of the obligate symbiont Buchnera.

Degnan PH, Ochman H, Moran NA.

PLoS Genet. 2011 Sep;7(9):e1002252. doi: 10.1371/journal.pgen.1002252. Epub 2011 Sep 1.

5.

The human mitochondrial transcriptome.

Mercer TR, Neph S, Dinger ME, Crawford J, Smith MA, Shearwood AM, Haugen E, Bracken CP, Rackham O, Stamatoyannopoulos JA, Filipovska A, Mattick JS.

Cell. 2011 Aug 19;146(4):645-58. doi: 10.1016/j.cell.2011.06.051.

6.

Traces of post-transcriptional RNA modifications in deep sequencing data.

Findeiss S, Langenberger D, Stadler PF, Hoffmann S.

Biol Chem. 2011 Apr;392(4):305-13. doi: 10.1515/BC.2011.043. Epub 2011 Feb 24.

PMID:
21345160
7.

Aphid genome expression reveals host-symbiont cooperation in the production of amino acids.

Hansen AK, Moran NA.

Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2849-54. doi: 10.1073/pnas.1013465108. Epub 2011 Jan 31.

8.

EcoCyc: a comprehensive database of Escherichia coli biology.

Keseler IM, Collado-Vides J, Santos-Zavaleta A, Peralta-Gil M, Gama-Castro S, Muñiz-Rascado L, Bonavides-Martinez C, Paley S, Krummenacker M, Altman T, Kaipa P, Spaulding A, Pacheco J, Latendresse M, Fulcher C, Sarker M, Shearer AG, Mackie A, Paulsen I, Gunsalus RP, Karp PD.

Nucleic Acids Res. 2011 Jan;39(Database issue):D583-90. doi: 10.1093/nar/gkq1143. Epub 2010 Nov 21.

9.

Functional convergence in reduced genomes of bacterial symbionts spanning 200 My of evolution.

McCutcheon JP, Moran NA.

Genome Biol Evol. 2010;2:708-18. doi: 10.1093/gbe/evq055. Epub 2010 Sep 9.

10.

The bacterial essence of tiny symbiont genomes.

McCutcheon JP.

Curr Opin Microbiol. 2010 Feb;13(1):73-8. doi: 10.1016/j.mib.2009.12.002. Epub 2010 Jan 8. Review.

11.

Convergent evolution of metabolic roles in bacterial co-symbionts of insects.

McCutcheon JP, McDonald BR, Moran NA.

Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15394-9. doi: 10.1073/pnas.0906424106. Epub 2009 Aug 24.

12.

Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana.

Iida K, Jin H, Zhu JK.

BMC Genomics. 2009 Apr 9;10:155. doi: 10.1186/1471-2164-10-155.

13.

Infernal 1.0: inference of RNA alignments.

Nawrocki EP, Kolbe DL, Eddy SR.

Bioinformatics. 2009 May 15;25(10):1335-7. doi: 10.1093/bioinformatics/btp157. Epub 2009 Mar 23. Erratum in: Bioinformatics. 2009 Jul 1;25(13):1713.

14.

The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria.

Moran NA, McLaughlin HJ, Sorek R.

Science. 2009 Jan 16;323(5912):379-82. doi: 10.1126/science.1167140.

15.

RNAalifold: improved consensus structure prediction for RNA alignments.

Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF.

BMC Bioinformatics. 2008 Nov 11;9:474. doi: 10.1186/1471-2105-9-474.

16.

GtRNAdb: a database of transfer RNA genes detected in genomic sequence.

Chan PP, Lowe TM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D93-7. doi: 10.1093/nar/gkn787. Epub 2008 Nov 4.

17.

Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts.

Tamas I, Wernegreen JJ, Nystedt B, Kauppinen SN, Darby AC, Gomez-Valero L, Lundin D, Poole AM, Andersson SG.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14934-9. doi: 10.1073/pnas.0806554105. Epub 2008 Sep 24.

18.

Organelle evolution: what's in a name?

Keeling PJ, Archibald JM.

Curr Biol. 2008 Apr 22;18(8):R345-7. doi: 10.1016/j.cub.2008.02.065.

19.

E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI).

Puigbò P, Bravo IG, Garcia-Vallvé S.

BMC Bioinformatics. 2008 Jan 29;9:65. doi: 10.1186/1471-2105-9-65.

20.

Superwobbling facilitates translation with reduced tRNA sets.

Rogalski M, Karcher D, Bock R.

Nat Struct Mol Biol. 2008 Feb;15(2):192-8. doi: 10.1038/nsmb.1370. Epub 2008 Jan 13.

PMID:
18193063

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