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Items: 20

1.

A method for detecting IBD regions simultaneously in multiple individuals--with applications to disease genetics.

Moltke I, Albrechtsen A, Hansen TV, Nielsen FC, Nielsen R.

Genome Res. 2011 Jul;21(7):1168-80. doi: 10.1101/gr.115360.110. Epub 2011 Apr 14.

2.

Single-tissue and cross-tissue heritability of gene expression via identity-by-descent in related or unrelated individuals.

Price AL, Helgason A, Thorleifsson G, McCarroll SA, Kong A, Stefansson K.

PLoS Genet. 2011 Feb;7(2):e1001317. doi: 10.1371/journal.pgen.1001317. Epub 2011 Feb 24.

3.

A fast, powerful method for detecting identity by descent.

Browning BL, Browning SR.

Am J Hum Genet. 2011 Feb 11;88(2):173-82. doi: 10.1016/j.ajhg.2011.01.010.

4.

Genomic runs of homozygosity record population history and consanguinity.

Kirin M, McQuillan R, Franklin CS, Campbell H, McKeigue PM, Wilson JF.

PLoS One. 2010 Nov 15;5(11):e13996. doi: 10.1371/journal.pone.0013996.

5.

Natural selection and the distribution of identity-by-descent in the human genome.

Albrechtsen A, Moltke I, Nielsen R.

Genetics. 2010 Sep;186(1):295-308. doi: 10.1534/genetics.110.113977. Epub 2010 Jun 30.

6.

Estimating genome-wide IBD sharing from SNP data via an efficient hidden Markov model of LD with application to gene mapping.

Bercovici S, Meek C, Wexler Y, Geiger D.

Bioinformatics. 2010 Jun 15;26(12):i175-82. doi: 10.1093/bioinformatics/btq204.

7.

Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls.

Wellcome Trust Case Control Consortium, Craddock N, Hurles ME, Cardin N, Pearson RD, Plagnol V, Robson S, Vukcevic D, Barnes C, Conrad DF, Giannoulatou E, Holmes C, Marchini JL, Stirrups K, Tobin MD, Wain LV, Yau C, Aerts J, Ahmad T, Andrews TD, Arbury H, Attwood A, Auton A, Ball SG, Balmforth AJ, Barrett JC, Barroso I, Barton A, Bennett AJ, Bhaskar S, Blaszczyk K, Bowes J, Brand OJ, Braund PS, Bredin F, Breen G, Brown MJ, Bruce IN, Bull J, Burren OS, Burton J, Byrnes J, Caesar S, Clee CM, Coffey AJ, Connell JM, Cooper JD, Dominiczak AF, Downes K, Drummond HE, Dudakia D, Dunham A, Ebbs B, Eccles D, Edkins S, Edwards C, Elliot A, Emery P, Evans DM, Evans G, Eyre S, Farmer A, Ferrier IN, Feuk L, Fitzgerald T, Flynn E, Forbes A, Forty L, Franklyn JA, Freathy RM, Gibbs P, Gilbert P, Gokumen O, Gordon-Smith K, Gray E, Green E, Groves CJ, Grozeva D, Gwilliam R, Hall A, Hammond N, Hardy M, Harrison P, Hassanali N, Hebaishi H, Hines S, Hinks A, Hitman GA, Hocking L, Howard E, Howard P, Howson JM, Hughes D, Hunt S, Isaacs JD, Jain M, Jewell DP, Johnson T, Jolley JD, Jones IR, Jones LA, Kirov G, Langford CF, Lango-Allen H, Lathrop GM, Lee J, Lee KL, Lees C, Lewis K, Lindgren CM, Maisuria-Armer M, Maller J, Mansfield J, Martin P, Massey DC, McArdle WL, McGuffin P, McLay KE, Mentzer A, Mimmack ML, Morgan AE, Morris AP, Mowat C, Myers S, Newman W, Nimmo ER, O'Donovan MC, Onipinla A, Onyiah I, Ovington NR, Owen MJ, Palin K, Parnell K, Pernet D, Perry JR, Phillips A, Pinto D, Prescott NJ, Prokopenko I, Quail MA, Rafelt S, Rayner NW, Redon R, Reid DM, Renwick, Ring SM, Robertson N, Russell E, St Clair D, Sambrook JG, Sanderson JD, Schuilenburg H, Scott CE, Scott R, Seal S, Shaw-Hawkins S, Shields BM, Simmonds MJ, Smyth DJ, Somaskantharajah E, Spanova K, Steer S, Stephens J, Stevens HE, Stone MA, Su Z, Symmons DP, Thompson JR, Thomson W, Travers ME, Turnbull C, Valsesia A, Walker M, Walker NM, Wallace C, Warren-Perry M, Watkins NA, Webster J, Weedon MN, Wilson AG, Woodburn M, Wordsworth BP, Young AH, Zeggini E, Carter NP, Frayling TM, Lee C, McVean G, Munroe PB, Palotie A, Sawcer SJ, Scherer SW, Strachan DP, Tyler-Smith C, Brown MA, Burton PR, Caulfield MJ, Compston A, Farrall M, Gough SC, Hall AS, Hattersley AT, Hill AV, Mathew CG, Pembrey M, Satsangi J, Stratton MR, Worthington J, Deloukas P, Duncanson A, Kwiatkowski DP, McCarthy MI, Ouwehand W, Parkes M, Rahman N, Todd JA, Samani NJ, Donnelly P.

Nature. 2010 Apr 1;464(7289):713-20. doi: 10.1038/nature08979.

8.

High-resolution detection of identity by descent in unrelated individuals.

Browning SR, Browning BL.

Am J Hum Genet. 2010 Apr 9;86(4):526-39. doi: 10.1016/j.ajhg.2010.02.021. Epub 2010 Mar 18.

9.

Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays.

Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen GB, Yeung G, Dahl F, Fernandez A, Staker B, Pant KP, Baccash J, Borcherding AP, Brownley A, Cedeno R, Chen L, Chernikoff D, Cheung A, Chirita R, Curson B, Ebert JC, Hacker CR, Hartlage R, Hauser B, Huang S, Jiang Y, Karpinchyk V, Koenig M, Kong C, Landers T, Le C, Liu J, McBride CE, Morenzoni M, Morey RE, Mutch K, Perazich H, Perry K, Peters BA, Peterson J, Pethiyagoda CL, Pothuraju K, Richter C, Rosenbaum AM, Roy S, Shafto J, Sharanhovich U, Shannon KW, Sheppy CG, Sun M, Thakuria JV, Tran A, Vu D, Zaranek AW, Wu X, Drmanac S, Oliphant AR, Banyai WC, Martin B, Ballinger DG, Church GM, Reid CA.

Science. 2010 Jan 1;327(5961):78-81. doi: 10.1126/science.1181498. Epub 2009 Nov 5.

10.

The genetics of inbreeding depression.

Charlesworth D, Willis JH.

Nat Rev Genet. 2009 Nov;10(11):783-96. doi: 10.1038/nrg2664. Review.

PMID:
19834483
11.

Global distribution of genomic diversity underscores rich complex history of continental human populations.

Auton A, Bryc K, Boyko AR, Lohmueller KE, Novembre J, Reynolds A, Indap A, Wright MH, Degenhardt JD, Gutenkunst RN, King KS, Nelson MR, Bustamante CD.

Genome Res. 2009 May;19(5):795-803. doi: 10.1101/gr.088898.108. Epub 2009 Feb 13.

12.

Detection of sharing by descent, long-range phasing and haplotype imputation.

Kong A, Masson G, Frigge ML, Gylfason A, Zusmanovich P, Thorleifsson G, Olason PI, Ingason A, Steinberg S, Rafnar T, Sulem P, Mouy M, Jonsson F, Thorsteinsdottir U, Gudbjartsson DF, Stefansson H, Stefansson K.

Nat Genet. 2008 Sep;40(9):1068-75. doi: 10.1038/ng.216.

13.

Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium.

Albrechtsen A, Sand Korneliussen T, Moltke I, van Overseem Hansen T, Nielsen FC, Nielsen R.

Genet Epidemiol. 2009 Apr;33(3):266-74. doi: 10.1002/gepi.20378.

PMID:
19025785
14.

Whole population, genome-wide mapping of hidden relatedness.

Gusev A, Lowe JK, Stoffel M, Daly MJ, Altshuler D, Breslow JL, Friedman JM, Pe'er I.

Genome Res. 2009 Feb;19(2):318-26. doi: 10.1101/gr.081398.108. Epub 2008 Oct 29.

15.

Combining identity by descent and association in genetic case-control studies.

Zhang Q, Wang S, Ott J.

BMC Genet. 2008 Jul 5;9:42. doi: 10.1186/1471-2156-9-42.

16.

Shared genomic segment analysis. Mapping disease predisposition genes in extended pedigrees using SNP genotype assays.

Thomas A, Camp NJ, Farnham JM, Allen-Brady K, Cannon-Albright LA.

Ann Hum Genet. 2008 Mar;72(Pt 2):279-87. Epub 2007 Dec 18.

17.

PLINK: a tool set for whole-genome association and population-based linkage analyses.

Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC.

Am J Hum Genet. 2007 Sep;81(3):559-75. Epub 2007 Jul 25.

18.

Genetic relatedness analysis: modern data and new challenges.

Weir BS, Anderson AD, Hepler AB.

Nat Rev Genet. 2006 Oct;7(10):771-80. Review.

PMID:
16983373
19.

A model for the length of tracts of identity by descent in finite random mating populations.

Chapman NH, Thompson EA.

Theor Popul Biol. 2003 Sep;64(2):141-50.

PMID:
12948676
20.

Multipoint quantitative-trait linkage analysis in general pedigrees.

Almasy L, Blangero J.

Am J Hum Genet. 1998 May;62(5):1198-211.

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