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Items: 1 to 20 of 57

1.

Bacterial community assembly based on functional genes rather than species.

Burke C, Steinberg P, Rusch D, Kjelleberg S, Thomas T.

Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):14288-93. doi: 10.1073/pnas.1101591108. Epub 2011 Aug 8.

2.

The unified neutral theory of biodiversity and biogeography at age ten.

Rosindell J, Hubbell SP, Etienne RS.

Trends Ecol Evol. 2011 Jul;26(7):340-8. doi: 10.1016/j.tree.2011.03.024. Epub 2011 May 10. Review.

PMID:
21561679
3.

Species sorting and neutral processes are both important during the initial assembly of bacterial communities.

Langenheder S, Székely AJ.

ISME J. 2011 Jul;5(7):1086-94. doi: 10.1038/ismej.2010.207. Epub 2011 Jan 27.

4.

Robust computational analysis of rRNA hypervariable tag datasets.

Sipos M, Jeraldo P, Chia N, Qu A, Dhillon AS, Konkel ME, Nelson KE, White BA, Goldenfeld N.

PLoS One. 2010 Dec 31;5(12):e15220. doi: 10.1371/journal.pone.0015220.

5.

Balance of neutral and deterministic components in the dynamics of activated sludge floc assembly.

Ayarza JM, Erijman L.

Microb Ecol. 2011 Apr;61(3):486-95. doi: 10.1007/s00248-010-9762-y. Epub 2010 Oct 23.

PMID:
20972561
6.

A mathematical synthesis of niche and neutral theories in community ecology.

Haegeman B, Loreau M.

J Theor Biol. 2011 Jan 21;269(1):150-65. doi: 10.1016/j.jtbi.2010.10.006. Epub 2010 Oct 12.

PMID:
20946903
7.

Niche and neutral models predict asymptotically equivalent species abundance distributions in high-diversity ecological communities.

Chisholm RA, Pacala SW.

Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15821-5. doi: 10.1073/pnas.1009387107. Epub 2010 Aug 23.

8.

Different but equal: the implausible assumption at the heart of neutral theory.

Purves DW, Turnbull LA.

J Anim Ecol. 2010 Nov;79(6):1215-25. doi: 10.1111/j.1365-2656.2010.01738.x.

9.

Combined niche and neutral effects in a microbial wastewater treatment community.

Ofiteru ID, Lunn M, Curtis TP, Wells GF, Criddle CS, Francis CA, Sloan WT.

Proc Natl Acad Sci U S A. 2010 Aug 31;107(35):15345-50. doi: 10.1073/pnas.1000604107. Epub 2010 Aug 12.

10.

Coexistence of perennial plants: an embarrassment of niches.

Adler PB, Ellner SP, Levine JM.

Ecol Lett. 2010 Aug 1;13(8):1019-29. doi: 10.1111/j.1461-0248.2010.01496.x. Epub 2010 Jun 10.

PMID:
20545729
11.

Picante: R tools for integrating phylogenies and ecology.

Kembel SW, Cowan PD, Helmus MR, Cornwell WK, Morlon H, Ackerly DD, Blomberg SP, Webb CO.

Bioinformatics. 2010 Jun 1;26(11):1463-4. doi: 10.1093/bioinformatics/btq166. Epub 2010 Apr 15.

PMID:
20395285
12.

Relative roles of niche and neutral processes in structuring a soil microbial community.

Dumbrell AJ, Nelson M, Helgason T, Dytham C, Fitter AH.

ISME J. 2010 Mar;4(3):337-45. doi: 10.1038/ismej.2009.122. Epub 2009 Nov 19. Erratum in: ISME J. 2010 Aug;4(8):1078.

PMID:
19924158
13.

Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history.

Cadotte MW, Jonathan Davies T, Regetz J, Kembel SW, Cleland E, Oakley TH.

Ecol Lett. 2010 Jan;13(1):96-105. doi: 10.1111/j.1461-0248.2009.01405.x. Epub 2009 Nov 9.

PMID:
19903196
14.

A general framework for neutral models of community dynamics.

Allouche O, Kadmon R.

Ecol Lett. 2009 Dec;12(12):1287-97. doi: 10.1111/j.1461-0248.2009.01379.x. Epub 2009 Oct 20.

PMID:
19845727
15.

Ecological equivalence: a realistic assumption for niche theory as a testable alternative to neutral theory.

Doncaster CP.

PLoS One. 2009 Oct 14;4(10):e7460. doi: 10.1371/journal.pone.0007460.

16.

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF.

Appl Environ Microbiol. 2009 Dec;75(23):7537-41. doi: 10.1128/AEM.01541-09. Epub 2009 Oct 2.

17.

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates.

Kunin V, Engelbrektson A, Ochman H, Hugenholtz P.

Environ Microbiol. 2010 Jan;12(1):118-23. doi: 10.1111/j.1462-2920.2009.02051.x. Epub 2009 Aug 27.

PMID:
19725865
18.

Inferring species interactions in tropical forests.

Volkov I, Banavar JR, Hubbell SP, Maritan A.

Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13854-9. doi: 10.1073/pnas.0903244106. Epub 2009 Aug 4.

19.

Innate and adaptive immunity cooperate flexibly to maintain host-microbiota mutualism.

Slack E, Hapfelmeier S, Stecher B, Velykoredko Y, Stoel M, Lawson MA, Geuking MB, Beutler B, Tedder TF, Hardt WD, Bercik P, Verdu EF, McCoy KD, Macpherson AJ.

Science. 2009 Jul 31;325(5940):617-20. doi: 10.1126/science.1172747.

20.

The merging of community ecology and phylogenetic biology.

Cavender-Bares J, Kozak KH, Fine PV, Kembel SW.

Ecol Lett. 2009 Jul;12(7):693-715. doi: 10.1111/j.1461-0248.2009.01314.x. Epub 2009 May 18. Review.

PMID:
19473217

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