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Items: 1 to 20 of 39

1.

Dynamic, sex-differential STAT5 and BCL6 binding to sex-biased, growth hormone-regulated genes in adult mouse liver.

Zhang Y, Laz EV, Waxman DJ.

Mol Cell Biol. 2012 Feb;32(4):880-96. doi: 10.1128/MCB.06312-11. Epub 2011 Dec 12.

2.

TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.

Williams K, Christensen J, Pedersen MT, Johansen JV, Cloos PA, Rappsilber J, Helin K.

Nature. 2011 May 19;473(7347):343-8. doi: 10.1038/nature10066. Epub 2011 Apr 13.

3.

Genome-wide analysis reveals novel molecular features of mouse recombination hotspots.

Smagulova F, Gregoretti IV, Brick K, Khil P, Camerini-Otero RD, Petukhova GV.

Nature. 2011 Apr 21;472(7343):375-8. doi: 10.1038/nature09869. Epub 2011 Apr 3.

4.

Mapping and analysis of chromatin state dynamics in nine human cell types.

Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein CB, Zhang X, Wang L, Issner R, Coyne M, Ku M, Durham T, Kellis M, Bernstein BE.

Nature. 2011 May 5;473(7345):43-9. doi: 10.1038/nature09906. Epub 2011 Mar 23.

5.

A cis-regulatory map of the Drosophila genome.

Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, Cheng C, Auburn RP, Davis MB, Domanus M, Shah PK, Morrison CA, Zieba J, Suchy S, Senderowicz L, Victorsen A, Bild NA, Grundstad AJ, Hanley D, MacAlpine DM, Mannervik M, Venken K, Bellen H, White R, Gerstein M, Russell S, Grossman RL, Ren B, Posakony JW, Kellis M, White KP.

Nature. 2011 Mar 24;471(7339):527-31. doi: 10.1038/nature09990.

6.

Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains.

Jiang H, Shukla A, Wang X, Chen WY, Bernstein BE, Roeder RG.

Cell. 2011 Feb 18;144(4):513-25. doi: 10.1016/j.cell.2011.01.020. Erratum in: Cell. 2011 Mar 4;144(5):825.

7.

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ.

Nature. 2011 Mar 24;471(7339):480-5. doi: 10.1038/nature09725. Epub 2010 Dec 22.

8.

A unique chromatin signature uncovers early developmental enhancers in humans.

Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J.

Nature. 2011 Feb 10;470(7333):279-83. doi: 10.1038/nature09692. Epub 2010 Dec 15.

9.

Histone H3K27ac separates active from poised enhancers and predicts developmental state.

Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, Hanna J, Lodato MA, Frampton GM, Sharp PA, Boyer LA, Young RA, Jaenisch R.

Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21931-6. doi: 10.1073/pnas.1016071107. Epub 2010 Nov 24.

10.

Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model.

Larson JL, Yuan GC.

BMC Bioinformatics. 2010 Nov 12;11:557. doi: 10.1186/1471-2105-11-557.

11.

A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs.

Kim J, Woo AJ, Chu J, Snow JW, Fujiwara Y, Kim CG, Cantor AB, Orkin SH.

Cell. 2010 Oct 15;143(2):313-24. doi: 10.1016/j.cell.2010.09.010.

12.

Unbiased, genome-wide in vivo mapping of transcriptional regulatory elements reveals sex differences in chromatin structure associated with sex-specific liver gene expression.

Ling G, Sugathan A, Mazor T, Fraenkel E, Waxman DJ.

Mol Cell Biol. 2010 Dec;30(23):5531-44. doi: 10.1128/MCB.00601-10. Epub 2010 Sep 27. Erratum in: Mol Cell Biol. 2012 Feb;32(4):897.

13.

Discovery and characterization of chromatin states for systematic annotation of the human genome.

Ernst J, Kellis M.

Nat Biotechnol. 2010 Aug;28(8):817-25. doi: 10.1038/nbt.1662. Epub 2010 Jul 25.

14.

PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression.

Liu W, Tanasa B, Tyurina OV, Zhou TY, Gassmann R, Liu WT, Ohgi KA, Benner C, Garcia-Bassets I, Aggarwal AK, Desai A, Dorrestein PC, Glass CK, Rosenfeld MG.

Nature. 2010 Jul 22;466(7305):508-12. doi: 10.1038/nature09272. Epub 2010 Jul 11.

15.

c-Myc regulates transcriptional pause release.

Rahl PB, Lin CY, Seila AC, Flynn RA, McCuine S, Burge CB, Sharp PA, Young RA.

Cell. 2010 Apr 30;141(3):432-45. doi: 10.1016/j.cell.2010.03.030.

16.

Nutrition, epigenetics, and developmental plasticity: implications for understanding human disease.

Burdge GC, Lillycrop KA.

Annu Rev Nutr. 2010 Aug 21;30:315-39. doi: 10.1146/annurev.nutr.012809.104751. Review.

PMID:
20415585
17.

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding.

Schmidt D, Wilson MD, Ballester B, Schwalie PC, Brown GD, Marshall A, Kutter C, Watt S, Martinez-Jimenez CP, Mackay S, Talianidis I, Flicek P, Odom DT.

Science. 2010 May 21;328(5981):1036-40. doi: 10.1126/science.1186176. Epub 2010 Apr 8.

18.

Prediction of Polycomb target genes in mouse embryonic stem cells.

Liu Y, Shao Z, Yuan GC.

Genomics. 2010 Jul;96(1):17-26. doi: 10.1016/j.ygeno.2010.03.012. Epub 2010 Mar 29.

19.

Insights into GATA-1-mediated gene activation versus repression via genome-wide chromatin occupancy analysis.

Yu M, Riva L, Xie H, Schindler Y, Moran TB, Cheng Y, Yu D, Hardison R, Weiss MJ, Orkin SH, Bernstein BE, Fraenkel E, Cantor AB.

Mol Cell. 2009 Nov 25;36(4):682-95. doi: 10.1016/j.molcel.2009.11.002.

20.

Discovering hematopoietic mechanisms through genome-wide analysis of GATA factor chromatin occupancy.

Fujiwara T, O'Geen H, Keles S, Blahnik K, Linnemann AK, Kang YA, Choi K, Farnham PJ, Bresnick EH.

Mol Cell. 2009 Nov 25;36(4):667-81. doi: 10.1016/j.molcel.2009.11.001.

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