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Items: 1 to 20 of 67

1.

The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes.

Bintu L, Kopaczynska M, Hodges C, Lubkowska L, Kashlev M, Bustamante C.

Nat Struct Mol Biol. 2011 Nov 13;18(12):1394-9. doi: 10.1038/nsmb.2164.

2.

Pioneer transcription factors: establishing competence for gene expression.

Zaret KS, Carroll JS.

Genes Dev. 2011 Nov 1;25(21):2227-41. doi: 10.1101/gad.176826.111. Review.

3.

Analysis of primary structure of chromatin with next-generation sequencing.

Tolstorukov MY, Kharchenko PV, Park PJ.

Epigenomics. 2010 Apr;2(2):187-197.

4.

Nucleosomes and the accessibility problem.

Wang X, Bai L, Bryant GO, Ptashne M.

Trends Genet. 2011 Dec;27(12):487-92. doi: 10.1016/j.tig.2011.09.001. Epub 2011 Oct 21.

PMID:
22019336
5.

Nucleosome-coupled expression differences in closely-related species.

Guan Y, Yao V, Tsui K, Gebbia M, Dunham MJ, Nislow C, Troyanskaya OG.

BMC Genomics. 2011 Sep 26;12:466. doi: 10.1186/1471-2164-12-466.

6.

A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization.

Gkikopoulos T, Schofield P, Singh V, Pinskaya M, Mellor J, Smolle M, Workman JL, Barton GJ, Owen-Hughes T.

Science. 2011 Sep 23;333(6050):1758-60. doi: 10.1126/science.1206097.

7.

Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization.

Tsankov A, Yanagisawa Y, Rhind N, Regev A, Rando OJ.

Genome Res. 2011 Nov;21(11):1851-62. doi: 10.1101/gr.122267.111. Epub 2011 Sep 13.

8.

Widespread signatures of recent selection linked to nucleosome positioning in the human lineage.

Prendergast JG, Semple CA.

Genome Res. 2011 Nov;21(11):1777-87. doi: 10.1101/gr.122275.111. Epub 2011 Sep 8.

9.

Evolution of nucleosome occupancy: conservation of global properties and divergence of gene-specific patterns.

Tsui K, Dubuis S, Gebbia M, Morse RH, Barkai N, Tirosh I, Nislow C.

Mol Cell Biol. 2011 Nov;31(21):4348-55. doi: 10.1128/MCB.05276-11. Epub 2011 Sep 6.

10.

Substantial histone reduction modulates genomewide nucleosomal occupancy and global transcriptional output.

Celona B, Weiner A, Di Felice F, Mancuso FM, Cesarini E, Rossi RL, Gregory L, Baban D, Rossetti G, Grianti P, Pagani M, Bonaldi T, Ragoussis J, Friedman N, Camilloni G, Bianchi ME, Agresti A.

PLoS Biol. 2011 Jun;9(6):e1001086. doi: 10.1371/journal.pbio.1001086. Epub 2011 Jun 28.

11.

Patterns and mechanisms of ancestral histone protein inheritance in budding yeast.

Radman-Livaja M, Verzijlbergen KF, Weiner A, van Welsem T, Friedman N, Rando OJ, van Leeuwen F.

PLoS Biol. 2011 Jun;9(6):e1001075. doi: 10.1371/journal.pbio.1001075. Epub 2011 Jun 7.

12.

Nucleosome positioning in Saccharomyces cerevisiae.

Jansen A, Verstrepen KJ.

Microbiol Mol Biol Rev. 2011 Jun;75(2):301-20. doi: 10.1128/MMBR.00046-10. Review.

13.

The nucleosome map of the mammalian liver.

Li Z, Schug J, Tuteja G, White P, Kaestner KH.

Nat Struct Mol Biol. 2011 Jun;18(6):742-6. doi: 10.1038/nsmb.2060. Epub 2011 May 29.

14.

Determinants of nucleosome organization in primary human cells.

Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A.

Nature. 2011 May 22;474(7352):516-20. doi: 10.1038/nature10002.

15.

A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome.

Zhang Z, Wippo CJ, Wal M, Ward E, Korber P, Pugh BF.

Science. 2011 May 20;332(6032):977-80. doi: 10.1126/science.1200508.

16.

Signals and combinatorial functions of histone modifications.

Suganuma T, Workman JL.

Annu Rev Biochem. 2011;80:473-99. doi: 10.1146/annurev-biochem-061809-175347. Review.

PMID:
21529160
17.

Impact of chromatin structure on sequence variability in the human genome.

Tolstorukov MY, Volfovsky N, Stephens RM, Park PJ.

Nat Struct Mol Biol. 2011 Apr;18(4):510-5. doi: 10.1038/nsmb.2012. Epub 2011 Mar 13.

18.

An effect of DNA sequence on nucleosome occupancy and removal.

Wang X, Bryant GO, Floer M, Spagna D, Ptashne M.

Nat Struct Mol Biol. 2011 Apr;18(4):507-9. doi: 10.1038/nsmb.2017. Epub 2011 Mar 6.

19.

Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation.

Xi Y, Yao J, Chen R, Li W, He X.

Genome Res. 2011 May;21(5):718-24. doi: 10.1101/gr.117101.110. Epub 2011 Mar 1.

20.

Nascent transcript sequencing visualizes transcription at nucleotide resolution.

Churchman LS, Weissman JS.

Nature. 2011 Jan 20;469(7330):368-73. doi: 10.1038/nature09652.

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