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Items: 1 to 20 of 45

1.

ProtTest 3: fast selection of best-fit models of protein evolution.

Darriba D, Taboada GL, Doallo R, Posada D.

Bioinformatics. 2011 Apr 15;27(8):1164-5. doi: 10.1093/bioinformatics/btr088. Epub 2011 Feb 17.

2.

Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast.

Geiler-Samerotte KA, Dion MF, Budnik BA, Wang SM, Hartl DL, Drummond DA.

Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):680-5. doi: 10.1073/pnas.1017570108. Epub 2010 Dec 27.

3.

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.

Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, von Mering C.

Nucleic Acids Res. 2011 Jan;39(Database issue):D561-8. doi: 10.1093/nar/gkq973. Epub 2010 Nov 2.

4.

Impact of translational error-induced and error-free misfolding on the rate of protein evolution.

Yang JR, Zhuang SM, Zhang J.

Mol Syst Biol. 2010 Oct 19;6:421. doi: 10.1038/msb.2010.78.

5.

Chaperonin-dependent accelerated substitution rates in prokaryotes.

Bogumil D, Dagan T.

Genome Biol Evol. 2010;2:602-8. doi: 10.1093/gbe/evq044. Epub 2010 Jul 21.

6.

The HSP70 chaperone machinery: J proteins as drivers of functional specificity.

Kampinga HH, Craig EA.

Nat Rev Mol Cell Biol. 2010 Aug;11(8):579-92. doi: 10.1038/nrm2941. Review. Erratum in: Nat Rev Mol Cell Biol. 2010 Oct;11(10):750.

7.

A role for codon order in translation dynamics.

Cannarozzi G, Schraudolph NN, Faty M, von Rohr P, Friberg MT, Roth AC, Gonnet P, Gonnet G, Barral Y.

Cell. 2010 Apr 16;141(2):355-67. doi: 10.1016/j.cell.2010.02.036. Erratum in: Cell. 2010 May 14;141(4):728. Cannarrozzi, Gina [corrected to Cannarozzi, Gina].

8.

An evolutionarily conserved mechanism for controlling the efficiency of protein translation.

Tuller T, Carmi A, Vestsigian K, Navon S, Dorfan Y, Zaborske J, Pan T, Dahan O, Furman I, Pilpel Y.

Cell. 2010 Apr 16;141(2):344-54. doi: 10.1016/j.cell.2010.03.031.

9.

GroEL dependency affects codon usage--support for a critical role of misfolding in gene evolution.

Warnecke T, Hurst LD.

Mol Syst Biol. 2010;6:340. doi: 10.1038/msb.2009.94. Epub 2010 Jan 19.

10.

The GroEL/GroES cis cavity as a passive anti-aggregation device.

Horwich AL, Apetri AC, Fenton WA.

FEBS Lett. 2009 Aug 20;583(16):2654-62. doi: 10.1016/j.febslet.2009.06.049. Epub 2009 Jul 3. Review.

11.

An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell.

Gong Y, Kakihara Y, Krogan N, Greenblatt J, Emili A, Zhang Z, Houry WA.

Mol Syst Biol. 2009;5:275. doi: 10.1038/msb.2009.26. Epub 2009 Jun 16.

12.

Chaperonin overexpression promotes genetic variation and enzyme evolution.

Tokuriki N, Tawfik DS.

Nature. 2009 Jun 4;459(7247):668-73. doi: 10.1038/nature08009.

PMID:
19494908
13.

Converging concepts of protein folding in vitro and in vivo.

Hartl FU, Hayer-Hartl M.

Nat Struct Mol Biol. 2009 Jun;16(6):574-81. doi: 10.1038/nsmb.1591. Review.

PMID:
19491934
14.

Hsp104, Hsp70 and Hsp40 interplay regulates formation, growth and elimination of Sup35 prions.

Shorter J, Lindquist S.

EMBO J. 2008 Oct 22;27(20):2712-24. doi: 10.1038/emboj.2008.194. Epub 2008 Oct 2.

15.

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

Drummond DA, Wilke CO.

Cell. 2008 Jul 25;134(2):341-52. doi: 10.1016/j.cell.2008.05.042.

16.

Functional characterization of the atypical Hsp70 subunit of yeast ribosome-associated complex.

Conz C, Otto H, Peisker K, Gautschi M, Wölfle T, Mayer MP, Rospert S.

J Biol Chem. 2007 Nov 23;282(47):33977-84. Epub 2007 Sep 27.

17.

Natural history and evolutionary principles of gene duplication in fungi.

Wapinski I, Pfeffer A, Friedman N, Regev A.

Nature. 2007 Sep 6;449(7158):54-61.

PMID:
17805289
18.

Finding community structure in networks using the eigenvectors of matrices.

Newman ME.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Sep;74(3 Pt 2):036104. Epub 2006 Sep 11.

PMID:
17025705
19.

An integrated view of protein evolution.

Pál C, Papp B, Lercher MJ.

Nat Rev Genet. 2006 May;7(5):337-48. Review.

PMID:
16619049
20.

BioGRID: a general repository for interaction datasets.

Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D535-9.

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