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Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions.

Chu C, Qu K, Zhong FL, Artandi SE, Chang HY.

Mol Cell. 2011 Nov 18;44(4):667-78. doi: 10.1016/j.molcel.2011.08.027. Epub 2011 Sep 29.


The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin.

Bertani S, Sauer S, Bolotin E, Sauer F.

Mol Cell. 2011 Sep 16;43(6):1040-6. doi: 10.1016/j.molcel.2011.08.019. Retraction in: Mol Cell. 2015 Feb 5;57(3):572.


Molecular mechanisms of long noncoding RNAs.

Wang KC, Chang HY.

Mol Cell. 2011 Sep 16;43(6):904-14. doi: 10.1016/j.molcel.2011.08.018. Review.


Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.

Genes Dev. 2011 Sep 15;25(18):1915-27. doi: 10.1101/gad.17446611. Epub 2011 Sep 2.


lincRNAs act in the circuitry controlling pluripotency and differentiation.

Guttman M, Donaghey J, Carey BW, Garber M, Grenier JK, Munson G, Young G, Lucas AB, Ach R, Bruhn L, Yang X, Amit I, Meissner A, Regev A, Rinn JL, Root DE, Lander ES.

Nature. 2011 Aug 28;477(7364):295-300. doi: 10.1038/nature10398.


Steroid Receptor RNA Activator - A nuclear receptor coregulator with multiple partners: Insights and challenges.

Colley SM, Leedman PJ.

Biochimie. 2011 Nov;93(11):1966-72. doi: 10.1016/j.biochi.2011.07.004. Epub 2011 Jul 27. Review.


The reality of pervasive transcription.

Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, Gingeras TR, Mattick JS.

PLoS Biol. 2011 Jul;9(7):e1000625; discussion e1001102. doi: 10.1371/journal.pbio.1000625. Epub 2011 Jul 12. No abstract available.


Mapping higher order structure of chromatin domains.

Espinoza CA, Ren B.

Nat Genet. 2011 Jun 28;43(7):615-6. doi: 10.1038/ng.869. No abstract available.


CTCF-mediated functional chromatin interactome in pluripotent cells.

Handoko L, Xu H, Li G, Ngan CY, Chew E, Schnapp M, Lee CW, Ye C, Ping JL, Mulawadi F, Wong E, Sheng J, Zhang Y, Poh T, Chan CS, Kunarso G, Shahab A, Bourque G, Cacheux-Rataboul V, Sung WK, Ruan Y, Wei CL.

Nat Genet. 2011 Jun 19;43(7):630-8. doi: 10.1038/ng.857. Erratum in: Nat Genet. 2011 Aug;43(8):815.


Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters.

Hung T, Wang Y, Lin MF, Koegel AK, Kotake Y, Grant GD, Horlings HM, Shah N, Umbricht C, Wang P, Wang Y, Kong B, Langerød A, Børresen-Dale AL, Kim SK, van de Vijver M, Sukumar S, Whitfield ML, Kellis M, Xiong Y, Wong DJ, Chang HY.

Nat Genet. 2011 Jun 5;43(7):621-9. doi: 10.1038/ng.848.


Long noncoding RNAs and human disease.

Wapinski O, Chang HY.

Trends Cell Biol. 2011 Jun;21(6):354-61. doi: 10.1016/j.tcb.2011.04.001. Epub 2011 May 6. Review. Erratum in: Trends Cell Biol. 2011 Oct;21(10):561.


No-nonsense functions for long noncoding RNAs.

Nagano T, Fraser P.

Cell. 2011 Apr 15;145(2):178-81. doi: 10.1016/j.cell.2011.03.014. Review.


PIWI-interacting small RNAs: the vanguard of genome defence.

Siomi MC, Sato K, Pezic D, Aravin AA.

Nat Rev Mol Cell Biol. 2011 Apr;12(4):246-58. doi: 10.1038/nrm3089. Review.


A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Wang KC, Yang YW, Liu B, Sanyal A, Corces-Zimmerman R, Chen Y, Lajoie BR, Protacio A, Flynn RA, Gupta RA, Wysocka J, Lei M, Dekker J, Helms JA, Chang HY.

Nature. 2011 Apr 7;472(7341):120-4. doi: 10.1038/nature09819. Epub 2011 Mar 20.


Long non-coding RNAs and enhancers.

Ørom UA, Shiekhattar R.

Curr Opin Genet Dev. 2011 Apr;21(2):194-8. doi: 10.1016/j.gde.2011.01.020. Epub 2011 Feb 15. Review.


B2 RNA represses TFIIH phosphorylation of RNA polymerase II.

Yakovchuk P, Goodrich JA, Kugel JF.

Transcription. 2011 Jan-Feb;2(1):45-9. doi: 10.4161/trns.2.1.14306.


HMGA1-dependent and independent 7SK RNA gene regulatory activity.

Eilebrecht S, Bécavin C, Léger H, Benecke BJ, Benecke A.

RNA Biol. 2011 Jan-Feb;8(1):143-57. Epub 2011 Jan 1.


Long noncoding RNAs in cell biology.

Clark MB, Mattick JS.

Semin Cell Dev Biol. 2011 Jun;22(4):366-76. doi: 10.1016/j.semcdb.2011.01.001. Epub 2011 Jan 20. Review.


The Polycomb complex PRC2 and its mark in life.

Margueron R, Reinberg D.

Nature. 2011 Jan 20;469(7330):343-9. doi: 10.1038/nature09784. Review.


Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5.

Hawkins PG, Morris KV.

Transcription. 2010 Nov;1(3):165-175. Epub 2010 Aug 16.

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