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A critical role for TCF-1 in T-lineage specification and differentiation.

Weber BN, Chi AW, Chavez A, Yashiro-Ohtani Y, Yang Q, Shestova O, Bhandoola A.

Nature. 2011 Aug 3;476(7358):63-8. doi: 10.1038/nature10279.


Understanding gene circuits at cell-fate branch points for rational cell reprogramming.

Zhou JX, Huang S.

Trends Genet. 2011 Feb;27(2):55-62. doi: 10.1016/j.tig.2010.11.002. Epub 2010 Dec 14. Review.


Transcription factor interplay during Drosophila haematopoiesis.

Waltzer L, Gobert V, Osman D, Haenlin M.

Int J Dev Biol. 2010;54(6-7):1107-15. doi: 10.1387/ijdb.093054lw. Review.


Lineage programming: navigating through transient regulatory states via binary decisions.

Bertrand V, Hobert O.

Curr Opin Genet Dev. 2010 Aug;20(4):362-8. doi: 10.1016/j.gde.2010.04.010. Epub 2010 May 27. Review.


Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing.

Wu JQ, Habegger L, Noisa P, Szekely A, Qiu C, Hutchison S, Raha D, Egholm M, Lin H, Weissman S, Cui W, Gerstein M, Snyder M.

Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):5254-9. doi: 10.1073/pnas.0914114107. Epub 2010 Mar 1.


Close association of RNA polymerase II and many transcription factors with Pol III genes.

Raha D, Wang Z, Moqtaderi Z, Wu L, Zhong G, Gerstein M, Struhl K, Snyder M.

Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3639-44. doi: 10.1073/pnas.0911315106. Epub 2010 Feb 5.


Wnt signaling in hematopoiesis: crucial factors for self-renewal, proliferation, and cell fate decisions.

Staal FJ, Luis TC.

J Cell Biochem. 2010 Apr 1;109(5):844-9. doi: 10.1002/jcb.22467. Review.


Binary fate decisions in differentiating neurons.

Jukam D, Desplan C.

Curr Opin Neurobiol. 2010 Feb;20(1):6-13. doi: 10.1016/j.conb.2009.11.002. Review.


The role of Runx1/AML1 and Evi-1 in the regulation of hematopoietic stem cells.

Kumano K, Kurokawa M.

J Cell Physiol. 2010 Feb;222(2):282-5. doi: 10.1002/jcp.21953. Review.


ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.

Morgan M, Anders S, Lawrence M, Aboyoun P, Pagès H, Gentleman R.

Bioinformatics. 2009 Oct 1;25(19):2607-8. doi: 10.1093/bioinformatics/btp450. Epub 2009 Aug 3.


Genomic response to Wnt signalling is highly context-dependent--evidence from DNA microarray and chromatin immunoprecipitation screens of Wnt/TCF targets.

Railo A, Pajunen A, Itäranta P, Naillat F, Vuoristo J, Kilpeläinen P, Vainio S.

Exp Cell Res. 2009 Oct 1;315(16):2690-704. doi: 10.1016/j.yexcr.2009.06.021. Epub 2009 Jun 27.


A functional screen to identify novel effectors of hematopoietic stem cell activity.

Deneault E, Cellot S, Faubert A, Laverdure JP, Fréchette M, Chagraoui J, Mayotte N, Sauvageau M, Ting SB, Sauvageau G.

Cell. 2009 Apr 17;137(2):369-79. doi: 10.1016/j.cell.2009.03.026.


The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development.

Wilson NK, Miranda-Saavedra D, Kinston S, Bonadies N, Foster SD, Calero-Nieto F, Dawson MA, Donaldson IJ, Dumon S, Frampton J, Janky R, Sun XH, Teichmann SA, Bannister AJ, Göttgens B.

Blood. 2009 May 28;113(22):5456-65. doi: 10.1182/blood-2009-01-200048. Epub 2009 Apr 3.


A census of human transcription factors: function, expression and evolution.

Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM.

Nat Rev Genet. 2009 Apr;10(4):252-63. doi: 10.1038/nrg2538.


Cell cycle and developmental control of hematopoiesis by Runx1.

Friedman AD.

J Cell Physiol. 2009 Jun;219(3):520-4. doi: 10.1002/jcp.21738. Review.


PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls.

Rozowsky J, Euskirchen G, Auerbach RK, Zhang ZD, Gibson T, Bjornson R, Carriero N, Snyder M, Gerstein MB.

Nat Biotechnol. 2009 Jan;27(1):66-75. doi: 10.1038/nbt.1518. Epub 2009 Jan 4.


Mapping and quantifying mammalian transcriptomes by RNA-Seq.

Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B.

Nat Methods. 2008 Jul;5(7):621-8. doi: 10.1038/nmeth.1226. Epub 2008 May 30.


Tcf3 is an integral component of the core regulatory circuitry of embryonic stem cells.

Cole MF, Johnstone SE, Newman JJ, Kagey MH, Young RA.

Genes Dev. 2008 Mar 15;22(6):746-55. doi: 10.1101/gad.1642408.


Activation of Wnt signaling in hematopoietic regeneration.

Congdon KL, Voermans C, Ferguson EC, DiMascio LN, Uqoezwa M, Zhao C, Reya T.

Stem Cells. 2008 May;26(5):1202-10. doi: 10.1634/stemcells.2007-0768. Epub 2008 Feb 28.


A gene regulatory network in mouse embryonic stem cells.

Zhou Q, Chipperfield H, Melton DA, Wong WH.

Proc Natl Acad Sci U S A. 2007 Oct 16;104(42):16438-43. Epub 2007 Oct 10.

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