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Items: 1 to 20 of 33

1.

Transforming binding affinities from three dimensions to two with application to cadherin clustering.

Wu Y, Vendome J, Shapiro L, Ben-Shaul A, Honig B.

Nature. 2011 Jul 27;475(7357):510-3. doi: 10.1038/nature10183.

2.

Processive phosphorylation of ERK MAP kinase in mammalian cells.

Aoki K, Yamada M, Kunida K, Yasuda S, Matsuda M.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12675-80. doi: 10.1073/pnas.1104030108. Epub 2011 Jul 18.

3.

Ultrasensitivity in multisite phosphorylation of membrane-anchored proteins.

Dushek O, van der Merwe PA, Shahrezaei V.

Biophys J. 2011 Mar 2;100(5):1189-97. doi: 10.1016/j.bpj.2011.01.060.

4.

Phase separation and bistability in a three-dimensional model for protein domain formation at biomembranes.

Alonso S, Bär M.

Phys Biol. 2010 Dec 8;7(4):046012. doi: 10.1088/1478-3975/7/4/046012.

PMID:
21149929
5.

Decreased diacylglycerol metabolism enhances ERK activation and augments CD8+ T cell functional responses.

Riese MJ, Grewal J, Das J, Zou T, Patil V, Chakraborty AK, Koretzky GA.

J Biol Chem. 2011 Feb 18;286(7):5254-65. doi: 10.1074/jbc.M110.171884. Epub 2010 Dec 7.

6.

Signalling ballet in space and time.

Kholodenko BN, Hancock JF, Kolch W.

Nat Rev Mol Cell Biol. 2010 Jun;11(6):414-26. doi: 10.1038/nrm2901. Review.

7.

Molecular mechanisms in signal transduction at the membrane.

Groves JT, Kuriyan J.

Nat Struct Mol Biol. 2010 Jun;17(6):659-65. doi: 10.1038/nsmb.1844. Epub 2010 May 23. Review.

8.

Geometry-controlled kinetics.

Bénichou O, Chevalier C, Klafter J, Meyer B, Voituriez R.

Nat Chem. 2010 Jun;2(6):472-7. doi: 10.1038/nchem.622. Epub 2010 Apr 18.

PMID:
20489716
9.

Spatio-temporal correlations can drastically change the response of a MAPK pathway.

Takahashi K, Tanase-Nicola S, ten Wolde PR.

Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2473-8. doi: 10.1073/pnas.0906885107. Epub 2010 Jan 25.

10.

Functional anatomy of T cell activation and synapse formation.

Fooksman DR, Vardhana S, Vasiliver-Shamis G, Liese J, Blair DA, Waite J, Sacristán C, Victora GD, Zanin-Zhorov A, Dustin ML.

Annu Rev Immunol. 2010;28:79-105. doi: 10.1146/annurev-immunol-030409-101308. Review.

11.

Efficient stochastic simulation of reaction-diffusion processes via direct compilation.

Lis M, Artyomov MN, Devadas S, Chakraborty AK.

Bioinformatics. 2009 Sep 1;25(17):2289-91. doi: 10.1093/bioinformatics/btp387. Epub 2009 Jul 3.

12.

Rule-based modeling of biochemical systems with BioNetGen.

Faeder JR, Blinov ML, Hlavacek WS.

Methods Mol Biol. 2009;500:113-67. doi: 10.1007/978-1-59745-525-1_5.

PMID:
19399430
13.

Spatiotemporal patterning during T cell activation is highly diverse.

Singleton KL, Roybal KT, Sun Y, Fu G, Gascoigne NR, van Oers NS, Wülfing C.

Sci Signal. 2009 Apr 7;2(65):ra15. doi: 10.1126/scisignal.2000199.

14.

Digital signaling and hysteresis characterize ras activation in lymphoid cells.

Das J, Ho M, Zikherman J, Govern C, Yang M, Weiss A, Chakraborty AK, Roose JP.

Cell. 2009 Jan 23;136(2):337-51. doi: 10.1016/j.cell.2008.11.051.

15.

Signal transduction at point-blank range: analysis of a spatial coupling mechanism for pathway crosstalk.

Monine MI, Haugh JM.

Biophys J. 2008 Sep;95(5):2172-82. doi: 10.1529/biophysj.108.128892. Epub 2008 May 23.

16.

Membrane-dependent signal integration by the Ras activator Son of sevenless.

Gureasko J, Galush WJ, Boykevisch S, Sondermann H, Bar-Sagi D, Groves JT, Kuriyan J.

Nat Struct Mol Biol. 2008 May;15(5):452-61. doi: 10.1038/nsmb.1418. Epub 2008 May 4. Erratum in: Nat Struct Mol Biol.2008 Jun;15(6): 651.

17.

Kinetic mechanism of fully activated S6K1 protein kinase.

Keshwani MM, Harris TK.

J Biol Chem. 2008 May 2;283(18):11972-80. doi: 10.1074/jbc.M800114200. Epub 2008 Mar 6.

18.

Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases.

Elf J, Ehrenberg M.

Syst Biol (Stevenage). 2004 Dec;1(2):230-6.

PMID:
17051695
19.

Bistability from double phosphorylation in signal transduction. Kinetic and structural requirements.

Ortega F, Garcés JL, Mas F, Kholodenko BN, Cascante M.

FEBS J. 2006 Sep;273(17):3915-26. Review.

20.

Stochastic reaction-diffusion simulation with MesoRD.

Hattne J, Fange D, Elf J.

Bioinformatics. 2005 Jun 15;21(12):2923-4. Epub 2005 Apr 7.

PMID:
15817692

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