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Items: 1 to 20 of 72

1.

Cyclopropane fatty acid synthase mutants of probiotic human-derived Lactobacillus reuteri are defective in TNF inhibition.

Jones SE, Whitehead K, Saulnier D, Thomas CM, Versalovic J, Britton RA.

Gut Microbes. 2011 Mar-Apr;2(2):69-79. Epub 2011 Mar 1.

2.

Engineering lactic acid bacteria for increased industrial functionality.

Bron PA, Kleerebezem M.

Bioeng Bugs. 2011 Mar-Apr;2(2):80-7. doi: 10.4161/bbug.2.2.13910. Review.

PMID:
21636994
3.

Modified bases enable high-efficiency oligonucleotide-mediated allelic replacement via mismatch repair evasion.

Wang HH, Xu G, Vonner AJ, Church G.

Nucleic Acids Res. 2011 Sep 1;39(16):7336-47. doi: 10.1093/nar/gkr183. Epub 2011 May 23.

4.

Genome-wide detection of chromosomal rearrangements, indels, and mutations in circular chromosomes by short read sequencing.

Skovgaard O, Bak M, Løbner-Olesen A, Tommerup N.

Genome Res. 2011 Aug;21(8):1388-93. doi: 10.1101/gr.117416.110. Epub 2011 May 9.

5.

Probing cellular processes with oligo-mediated recombination and using the knowledge gained to optimize recombineering.

Sawitzke JA, Costantino N, Li XT, Thomason LC, Bubunenko M, Court C, Court DL.

J Mol Biol. 2011 Mar 18;407(1):45-59. doi: 10.1016/j.jmb.2011.01.030. Epub 2011 Jan 19.

6.

Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways.

van Baarlen P, Troost F, van der Meer C, Hooiveld G, Boekschoten M, Brummer RJ, Kleerebezem M.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4562-9. doi: 10.1073/pnas.1000079107. Epub 2010 Sep 7.

7.

Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides.

Warner JR, Reeder PJ, Karimpour-Fard A, Woodruff LB, Gill RT.

Nat Biotechnol. 2010 Aug;28(8):856-62. doi: 10.1038/nbt.1653. Epub 2010 Jul 18.

PMID:
20639866
8.

Recombineering using RecTE from Pseudomonas syringae.

Swingle B, Bao Z, Markel E, Chambers A, Cartinhour S.

Appl Environ Microbiol. 2010 Aug;76(15):4960-8. doi: 10.1128/AEM.00911-10. Epub 2010 Jun 11.

9.

Host interactions of probiotic bacterial surface molecules: comparison with commensals and pathogens.

Lebeer S, Vanderleyden J, De Keersmaecker SC.

Nat Rev Microbiol. 2010 Mar;8(3):171-84. doi: 10.1038/nrmicro2297. Review.

PMID:
20157338
10.

BEDTools: a flexible suite of utilities for comparing genomic features.

Quinlan AR, Hall IM.

Bioinformatics. 2010 Mar 15;26(6):841-2. doi: 10.1093/bioinformatics/btq033. Epub 2010 Jan 28.

11.

Oligonucleotide recombination in Gram-negative bacteria.

Swingle B, Markel E, Costantino N, Bubunenko MG, Cartinhour S, Court DL.

Mol Microbiol. 2010 Jan;75(1):138-48. doi: 10.1111/j.1365-2958.2009.06976.x. Epub 2009 Nov 25.

12.

Programming cells by multiplex genome engineering and accelerated evolution.

Wang HH, Isaacs FJ, Carr PA, Sun ZZ, Xu G, Forest CR, Church GM.

Nature. 2009 Aug 13;460(7257):894-8. doi: 10.1038/nature08187. Epub 2009 Jul 26.

13.

Folate overproduction in Lactobacillus plantarum WCFS1 causes methotrexate resistance.

Wegkamp A, de Vos WM, Smid EJ.

FEMS Microbiol Lett. 2009 Aug;297(2):261-5. doi: 10.1111/j.1574-6968.2009.01690.x. Epub 2009 Jun 12.

14.

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.

Ye K, Schulz MH, Long Q, Apweiler R, Ning Z.

Bioinformatics. 2009 Nov 1;25(21):2865-71. doi: 10.1093/bioinformatics/btp394. Epub 2009 Jun 26.

15.

Clinical practice guidelines for the diagnosis and management of intravascular catheter-related infection: 2009 Update by the Infectious Diseases Society of America.

Mermel LA, Allon M, Bouza E, Craven DE, Flynn P, O'Grady NP, Raad II, Rijnders BJ, Sherertz RJ, Warren DK.

Clin Infect Dis. 2009 Jul 1;49(1):1-45. doi: 10.1086/599376. No abstract available. Erratum in: Clin Infect Dis. 2010 Apr 1;50(7):1079. Dosage error in article text. Clin Infect Dis. 2010 Feb 1;50(3):457.

16.

Fast and accurate short read alignment with Burrows-Wheeler transform.

Li H, Durbin R.

Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.

17.

Development and application of a upp-based counterselective gene replacement system for the study of the S-layer protein SlpX of Lactobacillus acidophilus NCFM.

Goh YJ, Azcárate-Peril MA, O'Flaherty S, Durmaz E, Valence F, Jardin J, Lortal S, Klaenhammer TR.

Appl Environ Microbiol. 2009 May;75(10):3093-105. doi: 10.1128/AEM.02502-08. Epub 2009 Mar 20.

18.

Rapid oligonucleotide-based recombineering of the chromosome of Salmonella enterica.

Gerlach RG, Jäckel D, Hölzer SU, Hensel M.

Appl Environ Microbiol. 2009 Mar;75(6):1575-80. doi: 10.1128/AEM.02509-08. Epub 2009 Jan 16.

19.

Genome-scale analyses of health-promoting bacteria: probiogenomics.

Ventura M, O'Flaherty S, Claesson MJ, Turroni F, Klaenhammer TR, van Sinderen D, O'Toole PW.

Nat Rev Microbiol. 2009 Jan;7(1):61-71. doi: 10.1038/nrmicro2047. Epub 2008 Nov 24. Review.

PMID:
19029955
20.

Accurate whole human genome sequencing using reversible terminator chemistry.

Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, Ellis DJ, Flatbush MR, Gormley NA, Humphray SJ, Irving LJ, Karbelashvili MS, Kirk SM, Li H, Liu X, Maisinger KS, Murray LJ, Obradovic B, Ost T, Parkinson ML, Pratt MR, Rasolonjatovo IM, Reed MT, Rigatti R, Rodighiero C, Ross MT, Sabot A, Sankar SV, Scally A, Schroth GP, Smith ME, Smith VP, Spiridou A, Torrance PE, Tzonev SS, Vermaas EH, Walter K, Wu X, Zhang L, Alam MD, Anastasi C, Aniebo IC, Bailey DM, Bancarz IR, Banerjee S, Barbour SG, Baybayan PA, Benoit VA, Benson KF, Bevis C, Black PJ, Boodhun A, Brennan JS, Bridgham JA, Brown RC, Brown AA, Buermann DH, Bundu AA, Burrows JC, Carter NP, Castillo N, Chiara E Catenazzi M, Chang S, Neil Cooley R, Crake NR, Dada OO, Diakoumakos KD, Dominguez-Fernandez B, Earnshaw DJ, Egbujor UC, Elmore DW, Etchin SS, Ewan MR, Fedurco M, Fraser LJ, Fuentes Fajardo KV, Scott Furey W, George D, Gietzen KJ, Goddard CP, Golda GS, Granieri PA, Green DE, Gustafson DL, Hansen NF, Harnish K, Haudenschild CD, Heyer NI, Hims MM, Ho JT, Horgan AM, Hoschler K, Hurwitz S, Ivanov DV, Johnson MQ, James T, Huw Jones TA, Kang GD, Kerelska TH, Kersey AD, Khrebtukova I, Kindwall AP, Kingsbury Z, Kokko-Gonzales PI, Kumar A, Laurent MA, Lawley CT, Lee SE, Lee X, Liao AK, Loch JA, Lok M, Luo S, Mammen RM, Martin JW, McCauley PG, McNitt P, Mehta P, Moon KW, Mullens JW, Newington T, Ning Z, Ling Ng B, Novo SM, O'Neill MJ, Osborne MA, Osnowski A, Ostadan O, Paraschos LL, Pickering L, Pike AC, Pike AC, Chris Pinkard D, Pliskin DP, Podhasky J, Quijano VJ, Raczy C, Rae VH, Rawlings SR, Chiva Rodriguez A, Roe PM, Rogers J, Rogert Bacigalupo MC, Romanov N, Romieu A, Roth RK, Rourke NJ, Ruediger ST, Rusman E, Sanches-Kuiper RM, Schenker MR, Seoane JM, Shaw RJ, Shiver MK, Short SW, Sizto NL, Sluis JP, Smith MA, Ernest Sohna Sohna J, Spence EJ, Stevens K, Sutton N, Szajkowski L, Tregidgo CL, Turcatti G, Vandevondele S, Verhovsky Y, Virk SM, Wakelin S, Walcott GC, Wang J, Worsley GJ, Yan J, Yau L, Zuerlein M, Rogers J, Mullikin JC, Hurles ME, McCooke NJ, West JS, Oaks FL, Lundberg PL, Klenerman D, Durbin R, Smith AJ.

Nature. 2008 Nov 6;456(7218):53-9. doi: 10.1038/nature07517.

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