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REST interacts with Cbx proteins and regulates polycomb repressive complex 1 occupancy at RE1 elements.

Ren X, Kerppola TK.

Mol Cell Biol. 2011 May;31(10):2100-10. doi: 10.1128/MCB.05088-11. Epub 2011 Mar 14.


Characterization of a family of RanBP2-type zinc fingers that can recognize single-stranded RNA.

Nguyen CD, Mansfield RE, Leung W, Vaz PM, Loughlin FE, Grant RP, Mackay JP.

J Mol Biol. 2011 Mar 25;407(2):273-83. doi: 10.1016/j.jmb.2010.12.041. Epub 2011 Jan 20.


Non-coding RNAs as regulators of embryogenesis.

Pauli A, Rinn JL, Schier AF.

Nat Rev Genet. 2011 Feb;12(2):136-49. doi: 10.1038/nrg2904. Review.


GC-rich sequence elements recruit PRC2 in mammalian ES cells.

Mendenhall EM, Koche RP, Truong T, Zhou VW, Issac B, Chi AS, Ku M, Bernstein BE.

PLoS Genet. 2010 Dec 9;6(12):e1001244. doi: 10.1371/journal.pgen.1001244.


Polycomb group targeting through different binding partners of RING1B C-terminal domain.

Wang R, Taylor AB, Leal BZ, Chadwell LV, Ilangovan U, Robinson AK, Schirf V, Hart PJ, Lafer EM, Demeler B, Hinck AP, McEwen DG, Kim CA.

Structure. 2010 Aug 11;18(8):966-75. doi: 10.1016/j.str.2010.04.013.


On the use of resampling tests for evaluating statistical significance of binding-site co-occurrence.

Huen DS, Russell S.

BMC Bioinformatics. 2010 Jun 30;11:359. doi: 10.1186/1471-2105-11-359.


Jarid2 is a PRC2 component in embryonic stem cells required for multi-lineage differentiation and recruitment of PRC1 and RNA Polymerase II to developmental regulators.

Landeira D, Sauer S, Poot R, Dvorkina M, Mazzarella L, Jørgensen HF, Pereira CF, Leleu M, Piccolo FM, Spivakov M, Brookes E, Pombo A, Fisher C, Skarnes WC, Snoek T, Bezstarosti K, Demmers J, Klose RJ, Casanova M, Tavares L, Brockdorff N, Merkenschlager M, Fisher AG.

Nat Cell Biol. 2010 Jun;12(6):618-24. doi: 10.1038/ncb2065. Epub 2010 May 16.


Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination.

Eskeland R, Leeb M, Grimes GR, Kress C, Boyle S, Sproul D, Gilbert N, Fan Y, Skoultchi AI, Wutz A, Bickmore WA.

Mol Cell. 2010 May 14;38(3):452-64. doi: 10.1016/j.molcel.2010.02.032.


The JARID2-PRC2 duality.

Herz HM, Shilatifard A.

Genes Dev. 2010 May;24(9):857-61. doi: 10.1101/gad.1921610.


An Oct4-centered protein interaction network in embryonic stem cells.

van den Berg DL, Snoek T, Mullin NP, Yates A, Bezstarosti K, Demmers J, Chambers I, Poot RA.

Cell Stem Cell. 2010 Apr 2;6(4):369-81. doi: 10.1016/j.stem.2010.02.014.


Polycomb complexes act redundantly to repress genomic repeats and genes.

Leeb M, Pasini D, Novatchkova M, Jaritz M, Helin K, Wutz A.

Genes Dev. 2010 Feb 1;24(3):265-76. doi: 10.1101/gad.544410.


BEDTools: a flexible suite of utilities for comparing genomic features.

Quinlan AR, Hall IM.

Bioinformatics. 2010 Mar 15;26(6):841-2. doi: 10.1093/bioinformatics/btq033. Epub 2010 Jan 28.


Role of the polycomb protein EED in the propagation of repressive histone marks.

Margueron R, Justin N, Ohno K, Sharpe ML, Son J, Drury WJ 3rd, Voigt P, Martin SR, Taylor WR, De Marco V, Pirrotta V, Reinberg D, Gamblin SJ.

Nature. 2009 Oct 8;461(7265):762-7. doi: 10.1038/nature08398. Epub 2009 Sep 20.


Mechanisms of polycomb gene silencing: knowns and unknowns.

Simon JA, Kingston RE.

Nat Rev Mol Cell Biol. 2009 Oct;10(10):697-708. doi: 10.1038/nrm2763. Epub 2009 Sep 9. Review.


CEAS: cis-regulatory element annotation system.

Shin H, Liu T, Manrai AK, Liu XS.

Bioinformatics. 2009 Oct 1;25(19):2605-6. doi: 10.1093/bioinformatics/btp479. Epub 2009 Aug 18.


Several distinct polycomb complexes regulate and co-localize on the INK4a tumor suppressor locus.

Maertens GN, El Messaoudi-Aubert S, Racek T, Stock JK, Nicholls J, Rodriguez-Niedenführ M, Gil J, Peters G.

PLoS One. 2009 Jul 28;4(7):e6380. doi: 10.1371/journal.pone.0006380.


Biochemical mechanisms of gene regulation by polycomb group protein complexes.

Müller J, Verrijzer P.

Curr Opin Genet Dev. 2009 Apr;19(2):150-8. doi: 10.1016/j.gde.2009.03.001. Epub 2009 Apr 1. Review.


Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Langmead B, Trapnell C, Pop M, Salzberg SL.

Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4.


A temporal threshold for formaldehyde crosslinking and fixation.

Schmiedeberg L, Skene P, Deaton A, Bird A.

PLoS One. 2009;4(2):e4636. doi: 10.1371/journal.pone.0004636. Epub 2009 Feb 27.


Epigenetic transcriptional repression of cellular genes by a viral SET protein.

Mujtaba S, Manzur KL, Gurnon JR, Kang M, Van Etten JL, Zhou MM.

Nat Cell Biol. 2008 Sep;10(9):1114-22. doi: 10.1038/ncb1772.

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