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Items: 1 to 20 of 34

1.

Overview of the CCP4 suite and current developments.

Winn MD, Ballard CC, Cowtan KD, Dodson EJ, Emsley P, Evans PR, Keegan RM, Krissinel EB, Leslie AG, McCoy A, McNicholas SJ, Murshudov GN, Pannu NS, Potterton EA, Powell HR, Read RJ, Vagin A, Wilson KS.

Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42. doi: 10.1107/S0907444910045749. Epub 2011 Mar 18.

2.

High rates of photobiological H2 production by a cyanobacterium under aerobic conditions.

Bandyopadhyay A, Stöckel J, Min H, Sherman LA, Pakrasi HB.

Nat Commun. 2010;1:139. doi: 10.1038/ncomms1139.

PMID:
21266989
3.

DUFs: families in search of function.

Bateman A, Coggill P, Finn RD.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt 10):1148-52. doi: 10.1107/S1744309110001685. Epub 2010 Mar 5.

4.

Dali server: conservation mapping in 3D.

Holm L, Rosenström P.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W545-9. doi: 10.1093/nar/gkq366. Epub 2010 May 10.

5.

A microscale protein NMR sample screening pipeline.

Rossi P, Swapna GV, Huang YJ, Aramini JM, Anklin C, Conover K, Hamilton K, Xiao R, Acton TB, Ertekin A, Everett JK, Montelione GT.

J Biomol NMR. 2010 Jan;46(1):11-22. doi: 10.1007/s10858-009-9386-z. Epub 2009 Nov 14.

6.

Backbone 1H, 13C, and 15N NMR assignments for the Cyanothece 51142 protein cce_0567: a protein associated with nitrogen fixation in the DUF683 family.

Buchko GW, Sofia HJ.

Biomol NMR Assign. 2008 Jun;2(1):25-8. doi: 10.1007/s12104-007-9075-3. Epub 2007 Dec 28.

PMID:
19636916
7.

Structural characterization of the protein cce_0567 from Cyanothece 51142, a metalloprotein associated with nitrogen fixation in the DUF683 family.

Buchko GW, Robinson H, Addlagatta A.

Biochim Biophys Acta. 2009 Apr;1794(4):627-33. doi: 10.1016/j.bbapap.2009.01.002. Epub 2009 Jan 23.

8.

Climbing nitrogenase: toward a mechanism of enzymatic nitrogen fixation.

Hoffman BM, Dean DR, Seefeldt LC.

Acc Chem Res. 2009 May 19;42(5):609-19. doi: 10.1021/ar8002128.

9.

The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle.

Welsh EA, Liberton M, Stöckel J, Loh T, Elvitigala T, Wang C, Wollam A, Fulton RS, Clifton SW, Jacobs JM, Aurora R, Ghosh BK, Sherman LA, Smith RD, Wilson RK, Pakrasi HB.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):15094-9. doi: 10.1073/pnas.0805418105. Epub 2008 Sep 23.

10.

Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes.

Stöckel J, Welsh EA, Liberton M, Kunnvakkam R, Aurora R, Pakrasi HB.

Proc Natl Acad Sci U S A. 2008 Apr 22;105(16):6156-61. doi: 10.1073/pnas.0711068105. Epub 2008 Apr 21.

11.

In vitro synthesis of the iron-molybdenum cofactor of nitrogenase from iron, sulfur, molybdenum, and homocitrate using purified proteins.

Curatti L, Hernandez JA, Igarashi RY, Soboh B, Zhao D, Rubio LM.

Proc Natl Acad Sci U S A. 2007 Nov 6;104(45):17626-31. Epub 2007 Oct 31.

12.

Clustal W and Clustal X version 2.0.

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.

Bioinformatics. 2007 Nov 1;23(21):2947-8. Epub 2007 Sep 10.

PMID:
17846036
13.

Inference of macromolecular assemblies from crystalline state.

Krissinel E, Henrick K.

J Mol Biol. 2007 Sep 21;372(3):774-97. Epub 2007 May 13.

PMID:
17681537
15.

Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis.

Okamoto S, Yamanishi Y, Ehira S, Kawashima S, Tonomura K, Kanehisa M.

Proteomics. 2007 Mar;7(6):900-9.

PMID:
17370268
16.

Promoting R & D in photobiological hydrogen production utilizing mariculture-raised cyanobacteria.

Sakurai H, Masukawa H.

Mar Biotechnol (NY). 2007 Mar-Apr;9(2):128-45. Epub 2007 Mar 5. Review.

PMID:
17340220
17.

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.

Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W299-302.

18.

Refinement of macromolecular structures by the maximum-likelihood method.

Murshudov GN, Vagin AA, Dodson EJ.

Acta Crystallogr D Biol Crystallogr. 1997 May 1;53(Pt 3):240-55.

PMID:
15299926
19.

SuperPose: a simple server for sophisticated structural superposition.

Maiti R, Van Domselaar GH, Zhang H, Wishart DS.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W590-4.

20.

Cyanobacterial circadian clocks--timing is everything.

Golden SS, Canales SR.

Nat Rev Microbiol. 2003 Dec;1(3):191-9. Review.

PMID:
15035023

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