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High abundance of JS-1- and Chloroflexi-related Bacteria in deeply buried marine sediments revealed by quantitative, real-time PCR.

Blazejak A, Schippers A.

FEMS Microbiol Ecol. 2010 May;72(2):198-207. doi: 10.1111/j.1574-6941.2010.00838.x. Epub 2010 Jan 19.


Subseafloor microbial communities associated with rapid turbidite deposition in the Gulf of Mexico continental slope (IODP Expedition 308).

Nunoura T, Soffientino B, Blazejak A, Kakuta J, Oida H, Schippers A, Takai K.

FEMS Microbiol Ecol. 2009 Sep;69(3):410-24. doi: 10.1111/j.1574-6941.2009.00718.x. Epub 2009 Jul 4.


Rapid detection and quantification of bisulfite reductase genes in oil field samples using real-time PCR.

Agrawal A, Lal B.

FEMS Microbiol Ecol. 2009 Aug;69(2):301-12. doi: 10.1111/j.1574-6941.2009.00714.x. Epub 2009 May 21.


The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.

Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, Kubista M, Mueller R, Nolan T, Pfaffl MW, Shipley GL, Vandesompele J, Wittwer CT.

Clin Chem. 2009 Apr;55(4):611-22. doi: 10.1373/clinchem.2008.112797. Epub 2009 Feb 26.


Sulfate-reducing bacteria in marine sediment (Aarhus Bay, Denmark): abundance and diversity related to geochemical zonation.

Leloup J, Fossing H, Kohls K, Holmkvist L, Borowski C, Jørgensen BB.

Environ Microbiol. 2009 May;11(5):1278-91. doi: 10.1111/j.1462-2920.2008.01855.x. Epub 2009 Feb 10.


Subsurface microbiology and biogeochemistry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307).

Webster G, Blazejak A, Cragg BA, Schippers A, Sass H, Rinna J, Tang X, Mathes F, Ferdelman TG, Fry JC, Weightman AJ, Parkes RJ.

Environ Microbiol. 2009 Jan;11(1):239-57. doi: 10.1111/j.1462-2920.2008.01759.x. Epub 2008 Sep 23.


Prokaryotic biodiversity and activity in the deep subseafloor biosphere.

Fry JC, Parkes RJ, Cragg BA, Weightman AJ, Webster G.

FEMS Microbiol Ecol. 2008 Nov;66(2):181-96. doi: 10.1111/j.1574-6941.2008.00566.x. Epub 2008 Aug 20. Review.


Identity and abundance of active sulfate-reducing bacteria in deep tidal flat sediments determined by directed cultivation and CARD-FISH analysis.

Gittel A, Mussmann M, Sass H, Cypionka H, Könneke M.

Environ Microbiol. 2008 Oct;10(10):2645-58. doi: 10.1111/j.1462-2920.2008.01686.x. Epub 2008 Jul 8.


Uncultured archaea in deep marine subsurface sediments: have we caught them all?

Teske A, Sørensen KB.

ISME J. 2008 Jan;2(1):3-18. doi: 10.1038/ismej.2007.90. Epub 2007 Nov 8. Review.


Inorganic carbon fixation by sulfate-reducing bacteria in the Black Sea water column.

Neretin LN, Abed RM, Schippers A, Schubert CJ, Kohls K, Kuypers MM.

Environ Microbiol. 2007 Dec;9(12):3019-24.


Phylogenetic diversity and distribution of dissimilatory sulfite reductase genes from deep-sea sediment cores.

Kaneko R, Hayashi T, Tanahashi M, Naganuma T.

Mar Biotechnol (NY). 2007 Jul-Aug;9(4):429-36. Epub 2007 May 12.


Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea.

Leloup J, Loy A, Knab NJ, Borowski C, Wagner M, Jørgensen BB.

Environ Microbiol. 2007 Jan;9(1):131-42.


Methane and sulfate profiles within the subsurface of a tidal flat are reflected by the distribution of sulfate-reducing bacteria and methanogenic archaea.

Wilms R, Sass H, Köpke B, Cypionka H, Engelen B.

FEMS Microbiol Ecol. 2007 Mar;59(3):611-21. Epub 2006 Oct 24.


A comparison of stable-isotope probing of DNA and phospholipid fatty acids to study prokaryotic functional diversity in sulfate-reducing marine sediment enrichment slurries.

Webster G, Watt LC, Rinna J, Fry JC, Evershed RP, Parkes RJ, Weightman AJ.

Environ Microbiol. 2006 Sep;8(9):1575-89.


Stratified communities of active Archaea in deep marine subsurface sediments.

Sørensen KB, Teske A.

Appl Environ Microbiol. 2006 Jul;72(7):4596-603.


Non-sulfate-reducing, syntrophic bacteria affiliated with desulfotomaculum cluster I are widely distributed in methanogenic environments.

Imachi H, Sekiguchi Y, Kamagata Y, Loy A, Qiu YL, Hugenholtz P, Kimura N, Wagner M, Ohashi A, Harada H.

Appl Environ Microbiol. 2006 Mar;72(3):2080-91.


Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin.

Inagaki F, Nunoura T, Nakagawa S, Teske A, Lever M, Lauer A, Suzuki M, Takai K, Delwiche M, Colwell FS, Nealson KH, Horikoshi K, D'Hondt S, Jørgensen BB.

Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2815-20. Epub 2006 Feb 13.

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