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Items: 1 to 20 of 69

1.

PU.1 and C/EBP(alpha) synergistically program distinct response to NF-kappaB activation through establishing monocyte specific enhancers.

Jin F, Li Y, Ren B, Natarajan R.

Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5290-5. doi: 10.1073/pnas.1017214108. Epub 2011 Mar 14.

2.

ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.

Ho JW, Bishop E, Karchenko PV, Nègre N, White KP, Park PJ.

BMC Genomics. 2011 Feb 28;12:134. doi: 10.1186/1471-2164-12-134.

3.

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

John S, Sabo PJ, Thurman RE, Sung MH, Biddie SC, Johnson TA, Hager GL, Stamatoyannopoulos JA.

Nat Genet. 2011 Mar;43(3):264-8. doi: 10.1038/ng.759. Epub 2011 Jan 23.

PMID:
21258342
4.

Entrez Gene: gene-centered information at NCBI.

Maglott D, Ostell J, Pruitt KD, Tatusova T.

Nucleic Acids Res. 2011 Jan;39(Database issue):D52-7. doi: 10.1093/nar/gkq1237. Epub 2010 Nov 28.

5.

Database resources of the National Center for Biotechnology Information.

Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Federhen S, Feolo M, Fingerman IM, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Phan L, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, Wilbur WJ, Yaschenko E, Ye J.

Nucleic Acids Res. 2011 Jan;39(Database issue):D38-51. doi: 10.1093/nar/gkq1172. Epub 2010 Nov 21.

6.

Transcription factors ETF, E2F, and SP-1 are involved in cytokine-independent proliferation of murine hepatocytes.

Zellmer S, Schmidt-Heck W, Godoy P, Weng H, Meyer C, Lehmann T, Sparna T, Schormann W, Hammad S, Kreutz C, Timmer J, von Weizsäcker F, Thürmann PA, Merfort I, Guthke R, Dooley S, Hengstler JG, Gebhardt R.

Hepatology. 2010 Dec;52(6):2127-36. doi: 10.1002/hep.23930. Epub 2010 Oct 26.

PMID:
20979052
7.

Coevolution within a transcriptional network by compensatory trans and cis mutations.

Kuo D, Licon K, Bandyopadhyay S, Chuang R, Luo C, Catalana J, Ravasi T, Tan K, Ideker T.

Genome Res. 2010 Dec;20(12):1672-8. doi: 10.1101/gr.111765.110. Epub 2010 Oct 26.

8.

Ethanol-induced HO-1 and NQO1 are differentially regulated by HIF-1alpha and Nrf2 to attenuate inflammatory cytokine expression.

Yeligar SM, Machida K, Kalra VK.

J Biol Chem. 2010 Nov 12;285(46):35359-73. doi: 10.1074/jbc.M110.138636. Epub 2010 Sep 10.

9.

Redox regulation of lipopolysaccharide-mediated sulfiredoxin induction, which depends on both AP-1 and Nrf2.

Kim H, Jung Y, Shin BS, Kim H, Song H, Bae SH, Rhee SG, Jeong W.

J Biol Chem. 2010 Nov 5;285(45):34419-28. doi: 10.1074/jbc.M110.126839. Epub 2010 Sep 7.

10.

Differential proteomics analysis reveals a role for E2F2 in the regulation of the Ahr pathway in T lymphocytes.

Azkargorta M, Fullaondo A, Laresgoiti U, Aloria K, Infante A, Arizmendi JM, Zubiaga AM.

Mol Cell Proteomics. 2010 Oct;9(10):2184-94. doi: 10.1074/mcp.M110.001263. Epub 2010 Jun 23.

11.

Next-generation genomics: an integrative approach.

Hawkins RD, Hon GC, Ren B.

Nat Rev Genet. 2010 Jul;11(7):476-86. doi: 10.1038/nrg2795. Review.

12.

Integrating multiple evidence sources to predict transcription factor binding in the human genome.

Ernst J, Plasterer HL, Simon I, Bar-Joseph Z.

Genome Res. 2010 Apr;20(4):526-36. doi: 10.1101/gr.096305.109. Epub 2010 Mar 10.

13.

An atlas of combinatorial transcriptional regulation in mouse and man.

Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, Han JH, Hashimoto T, Hide W, Hofmann O, Kamburov A, Kaur M, Kawaji H, Kubosaki A, Lassmann T, van Nimwegen E, MacPherson CR, Ogawa C, Radovanovic A, Schwartz A, Teasdale RD, Tegnér J, Lenhard B, Teichmann SA, Arakawa T, Ninomiya N, Murakami K, Tagami M, Fukuda S, Imamura K, Kai C, Ishihara R, Kitazume Y, Kawai J, Hume DA, Ideker T, Hayashizaki Y.

Cell. 2010 Mar 5;140(5):744-52. doi: 10.1016/j.cell.2010.01.044. Erratum in: Cell. 2010 Apr 16;141(2):369. Kamburov, Atanas [added]; Kaur, Mandeep [added]; MacPherson, Cameron Ross [added]; Radovanovic, Aleksandar [added]; Schwartz, Ariel [added].

14.

Specific interaction between E2F1 and Sp1 regulates the expression of murine CTP:phosphocholine cytidylyltransferase alpha during the S phase.

Elena C, Banchio C.

Biochim Biophys Acta. 2010 Apr;1801(4):537-46. doi: 10.1016/j.bbalip.2010.01.005. Epub 2010 Jan 21.

PMID:
20096375
15.

The UCSC Genome Browser database: update 2010.

Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, Fujita PA, Diekhans M, Smith KE, Rosenbloom KR, Raney BJ, Pohl A, Pheasant M, Meyer LR, Learned K, Hsu F, Hillman-Jackson J, Harte RA, Giardine B, Dreszer TR, Clawson H, Barber GP, Haussler D, Kent WJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D613-9. doi: 10.1093/nar/gkp939. Epub 2009 Nov 11.

16.

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.

Portales-Casamar E, Thongjuea S, Kwon AT, Arenillas D, Zhao X, Valen E, Yusuf D, Lenhard B, Wasserman WW, Sandelin A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D105-10. doi: 10.1093/nar/gkp950. Epub 2009 Nov 11.

17.

ChIP-seq: advantages and challenges of a maturing technology.

Park PJ.

Nat Rev Genet. 2009 Oct;10(10):669-80. doi: 10.1038/nrg2641. Epub 2009 Sep 8. Review.

18.

Prediction and experimental validation of novel STAT3 target genes in human cancer cells.

Oh YM, Kim JK, Choi Y, Choi S, Yoo JY.

PLoS One. 2009 Sep 4;4(9):e6911. doi: 10.1371/journal.pone.0006911.

19.

Insights from genomic profiling of transcription factors.

Farnham PJ.

Nat Rev Genet. 2009 Sep;10(9):605-16. doi: 10.1038/nrg2636. Epub 2009 Aug 11. Review.

20.

Distinguishing direct versus indirect transcription factor-DNA interactions.

Gordân R, Hartemink AJ, Bulyk ML.

Genome Res. 2009 Nov;19(11):2090-100. doi: 10.1101/gr.094144.109. Epub 2009 Aug 3.

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