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Items: 1 to 20 of 66

1.

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions.

Chu C, Qu K, Zhong FL, Artandi SE, Chang HY.

Mol Cell. 2011 Nov 18;44(4):667-78. doi: 10.1016/j.molcel.2011.08.027. Epub 2011 Sep 29.

2.

HITS-CLIP: panoramic views of protein-RNA regulation in living cells.

Darnell RB.

Wiley Interdiscip Rev RNA. 2010 Sep-Oct;1(2):266-86. doi: 10.1002/wrna.31. Epub 2010 Aug 2. Review.

3.

The reality of pervasive transcription.

Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, Gingeras TR, Mattick JS.

PLoS Biol. 2011 Jul;9(7):e1000625; discussion e1001102. doi: 10.1371/journal.pbio.1000625. Epub 2011 Jul 12. No abstract available.

4.

No-nonsense functions for long noncoding RNAs.

Nagano T, Fraser P.

Cell. 2011 Apr 15;145(2):178-81. doi: 10.1016/j.cell.2011.03.014. Review.

5.

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Wang KC, Yang YW, Liu B, Sanyal A, Corces-Zimmerman R, Chen Y, Lajoie BR, Protacio A, Flynn RA, Gupta RA, Wysocka J, Lei M, Dekker J, Helms JA, Chang HY.

Nature. 2011 Apr 7;472(7341):120-4. doi: 10.1038/nature09819. Epub 2011 Mar 20.

6.

X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila.

Larschan E, Bishop EP, Kharchenko PV, Core LJ, Lis JT, Park PJ, Kuroda MI.

Nature. 2011 Mar 3;471(7336):115-8. doi: 10.1038/nature09757.

7.

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ.

Nature. 2011 Mar 24;471(7339):480-5. doi: 10.1038/nature09725. Epub 2010 Dec 22.

8.

Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs.

Mao YS, Sunwoo H, Zhang B, Spector DL.

Nat Cell Biol. 2011 Jan;13(1):95-101. doi: 10.1038/ncb2140. Epub 2010 Dec 19.

9.

Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes.

Schmitz KM, Mayer C, Postepska A, Grummt I.

Genes Dev. 2010 Oct 15;24(20):2264-9. doi: 10.1101/gad.590910.

10.

Nuclear speckles.

Spector DL, Lamond AI.

Cold Spring Harb Perspect Biol. 2011 Feb 1;3(2). pii: a000646. doi: 10.1101/cshperspect.a000646. Review.

11.

Long noncoding RNAs with enhancer-like function in human cells.

├śrom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G, Lai F, Zytnicki M, Notredame C, Huang Q, Guigo R, Shiekhattar R.

Cell. 2010 Oct 1;143(1):46-58. doi: 10.1016/j.cell.2010.09.001.

12.

Long noncoding RNA as modular scaffold of histone modification complexes.

Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, Shi Y, Segal E, Chang HY.

Science. 2010 Aug 6;329(5992):689-93. doi: 10.1126/science.1192002. Epub 2010 Jul 8.

13.

Paraspeckles.

Fox AH, Lamond AI.

Cold Spring Harb Perspect Biol. 2010 Jul;2(7):a000687. doi: 10.1101/cshperspect.a000687. Epub 2010 Jun 23. Review.

14.

Most "dark matter" transcripts are associated with known genes.

van Bakel H, Nislow C, Blencowe BJ, Hughes TR.

PLoS Biol. 2010 May 18;8(5):e1000371. doi: 10.1371/journal.pbio.1000371.

15.

RNA traffic control of chromatin complexes.

Koziol MJ, Rinn JL.

Curr Opin Genet Dev. 2010 Apr;20(2):142-8. doi: 10.1016/j.gde.2010.03.003. Epub 2010 Mar 31. Review.

16.

Non-coding RNAs: regulators of disease.

Taft RJ, Pang KC, Mercer TR, Dinger M, Mattick JS.

J Pathol. 2010 Jan;220(2):126-39. doi: 10.1002/path.2638. Review.

PMID:
19882673
17.

Long-range spreading of dosage compensation in Drosophila captures transcribed autosomal genes inserted on X.

Gorchakov AA, Alekseyenko AA, Kharchenko P, Park PJ, Kuroda MI.

Genes Dev. 2009 Oct 1;23(19):2266-71. doi: 10.1101/gad.1840409.

18.
19.

Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome.

Lee JT.

Genes Dev. 2009 Aug 15;23(16):1831-42. doi: 10.1101/gad.1811209.

20.

Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation.

Gelbart ME, Larschan E, Peng S, Park PJ, Kuroda MI.

Nat Struct Mol Biol. 2009 Aug;16(8):825-32. doi: 10.1038/nsmb.1644. Epub 2009 Aug 2.

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