Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 39

1.

All-atom empirical potential for molecular modeling and dynamics studies of proteins.

MacKerell AD, Bashford D, Bellott M, Dunbrack RL, Evanseck JD, Field MJ, Fischer S, Gao J, Guo H, Ha S, Joseph-McCarthy D, Kuchnir L, Kuczera K, Lau FT, Mattos C, Michnick S, Ngo T, Nguyen DT, Prodhom B, Reiher WE, Roux B, Schlenkrich M, Smith JC, Stote R, Straub J, Watanabe M, Wiórkiewicz-Kuczera J, Yin D, Karplus M.

J Phys Chem B. 1998 Apr 30;102(18):3586-616. doi: 10.1021/jp973084f.

PMID:
24889800
2.

Serine protease autotransporters of enterobacteriaceae (SPATEs): biogenesis and function.

Dautin N.

Toxins (Basel). 2010 Jun;2(6):1179-206. doi: 10.3390/toxins2061179. Review.

4.

REFMAC5 for the refinement of macromolecular crystal structures.

Murshudov GN, Skubák P, Lebedev AA, Pannu NS, Steiner RA, Nicholls RA, Winn MD, Long F, Vagin AA.

Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):355-67. doi: 10.1107/S0907444911001314.

5.

Overview of the CCP4 suite and current developments.

Winn MD, Ballard CC, Cowtan KD, Dodson EJ, Emsley P, Evans PR, Keegan RM, Krissinel EB, Leslie AG, McCoy A, McNicholas SJ, Murshudov GN, Pannu NS, Potterton EA, Powell HR, Read RJ, Vagin A, Wilson KS.

Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42. doi: 10.1107/S0907444910045749.

6.

Autotransporter passenger domain secretion requires a hydrophobic cavity at the extracellular entrance of the β-domain pore.

Zhai Y, Zhang K, Huo Y, Zhu Y, Zhou Q, Lu J, Black I, Pang X, Roszak AW, Zhang X, Isaacs NW, Sun F.

Biochem J. 2011 May 1;435(3):577-87. doi: 10.1042/BJ20101548.

PMID:
21306302
7.

Graphical analysis of pH-dependent properties of proteins predicted using PROPKA.

Rostkowski M, Olsson MH, Søndergaard CR, Jensen JH.

BMC Struct Biol. 2011 Jan 26;11:6. doi: 10.1186/1472-6807-11-6.

8.

Molecular basis for the structural stability of an enclosed β-barrel loop.

Tian P, Bernstein HD.

J Mol Biol. 2010 Sep 17;402(2):475-89. doi: 10.1016/j.jmb.2010.07.035.

9.

Assembly of outer-membrane proteins in bacteria and mitochondria.

Tommassen J.

Microbiology. 2010 Sep;156(Pt 9):2587-96. doi: 10.1099/mic.0.042689-0.

PMID:
20616105
10.

A novel intein-like autoproteolytic mechanism in autotransporter proteins.

Tajima N, Kawai F, Park SY, Tame JR.

J Mol Biol. 2010 Oct 1;402(4):645-56. doi: 10.1016/j.jmb.2010.06.068.

PMID:
20615416
11.

Importance of conserved residues of the serine protease autotransporter beta-domain in passenger domain processing and beta-barrel assembly.

Yen YT, Tsang C, Cameron TA, Ankrah DO, Rodou A, Stathopoulos C.

Infect Immun. 2010 Aug;78(8):3516-28. doi: 10.1128/IAI.00390-10.

12.

Features and development of Coot.

Emsley P, Lohkamp B, Scott WG, Cowtan K.

Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501. doi: 10.1107/S0907444910007493.

13.

PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH.

Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. doi: 10.1107/S0907444909052925.

14.

Crystal structure of a full-length autotransporter.

van den Berg B.

J Mol Biol. 2010 Feb 26;396(3):627-33. doi: 10.1016/j.jmb.2009.12.061.

PMID:
20060837
15.

Interaction of an autotransporter passenger domain with BamA during its translocation across the bacterial outer membrane.

Ieva R, Bernstein HD.

Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):19120-5. doi: 10.1073/pnas.0907912106.

16.

Coupling of calcium and substrate binding through loop alignment in the outer-membrane transporter BtuB.

Gumbart J, Wiener MC, Tajkhorshid E.

J Mol Biol. 2009 Nov 13;393(5):1129-42. doi: 10.1016/j.jmb.2009.09.004.

17.

Phaser crystallographic software.

McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ.

J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674.

18.

Modeling protein splicing: reaction pathway for C-terminal splice and intein scission.

Mujika JI, Lopez X, Mulholland AJ.

J Phys Chem B. 2009 Apr 23;113(16):5607-16. doi: 10.1021/jp808911p.

PMID:
19326906
19.

Vectorial transport and folding of an autotransporter virulence protein during outer membrane secretion.

Junker M, Besingi RN, Clark PL.

Mol Microbiol. 2009 Mar;71(5):1323-32. doi: 10.1111/j.1365-2958.2009.06607.x.

20.

Autotransporter structure reveals intra-barrel cleavage followed by conformational changes.

Barnard TJ, Dautin N, Lukacik P, Bernstein HD, Buchanan SK.

Nat Struct Mol Biol. 2007 Dec;14(12):1214-20.

Items per page

Supplemental Content

Support Center