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Items: 1 to 20 of 47

1.

Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome.

Inagaki S, Miura-Kamio A, Nakamura Y, Lu F, Cui X, Cao X, Kimura H, Saze H, Kakutani T.

EMBO J. 2010 Oct 20;29(20):3496-506. doi: 10.1038/emboj.2010.227. Epub 2010 Sep 10.

2.

Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells.

Molnar A, Melnyk CW, Bassett A, Hardcastle TJ, Dunn R, Baulcombe DC.

Science. 2010 May 14;328(5980):872-5. doi: 10.1126/science.1187959. Epub 2010 Apr 22.

3.

Embryo and endosperm inherit distinct chromatin and transcriptional states from the female gametes in Arabidopsis.

Pillot M, Baroux C, Vazquez MA, Autran D, Leblanc O, Vielle-Calzada JP, Grossniklaus U, Grimanelli D.

Plant Cell. 2010 Feb;22(2):307-20. doi: 10.1105/tpc.109.071647. Epub 2010 Feb 5.

4.

Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis.

Zheng B, Wang Z, Li S, Yu B, Liu JY, Chen X.

Genes Dev. 2009 Dec 15;23(24):2850-60. doi: 10.1101/gad.1868009.

5.

RNA polymerase V transcription guides ARGONAUTE4 to chromatin.

Wierzbicki AT, Ream TS, Haag JR, Pikaard CS.

Nat Genet. 2009 May;41(5):630-4. doi: 10.1038/ng.365. Epub 2009 Apr 19.

6.

An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites.

Miura A, Nakamura M, Inagaki S, Kobayashi A, Saze H, Kakutani T.

EMBO J. 2009 Apr 22;28(8):1078-86. doi: 10.1038/emboj.2009.59. Epub 2009 Mar 5.

7.

Small RNAs in transcriptional gene silencing and genome defence.

Moazed D.

Nature. 2009 Jan 22;457(7228):413-20. doi: 10.1038/nature07756. Review.

8.

SRA-domain proteins required for DRM2-mediated de novo DNA methylation.

Johnson LM, Law JA, Khattar A, Henderson IR, Jacobsen SE.

PLoS Genet. 2008 Nov;4(11):e1000280. doi: 10.1371/journal.pgen.1000280. Epub 2008 Nov 28.

9.

Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes.

Wierzbicki AT, Haag JR, Pikaard CS.

Cell. 2008 Nov 14;135(4):635-48. doi: 10.1016/j.cell.2008.09.035.

10.

Improved northern blot method for enhanced detection of small RNA.

Pall GS, Hamilton AJ.

Nat Protoc. 2008;3(6):1077-84. doi: 10.1038/nprot.2008.67.

PMID:
18536652
11.

An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plants.

Saleh A, Alvarez-Venegas R, Avramova Z.

Nat Protoc. 2008;3(6):1018-25. doi: 10.1038/nprot.2008.66.

PMID:
18536649
12.

Roles of RNA polymerase IV in gene silencing.

Pikaard CS, Haag JR, Ream T, Wierzbicki AT.

Trends Plant Sci. 2008 Jul;13(7):390-7. doi: 10.1016/j.tplants.2008.04.008. Review.

13.

Small RNA metabolism in Arabidopsis.

Ramachandran V, Chen X.

Trends Plant Sci. 2008 Jul;13(7):368-74. doi: 10.1016/j.tplants.2008.03.008. Epub 2008 May 22. Review.

14.

Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR.

Cell. 2008 May 2;133(3):523-36. doi: 10.1016/j.cell.2008.03.029.

15.

The organization of histone H3 modifications as revealed by a panel of specific monoclonal antibodies.

Kimura H, Hayashi-Takanaka Y, Goto Y, Takizawa N, Nozaki N.

Cell Struct Funct. 2008;33(1):61-73. Epub 2008 Jan 28.

16.

Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana.

Saze H, Shiraishi A, Miura A, Kakutani T.

Science. 2008 Jan 25;319(5862):462-5. doi: 10.1126/science.1150987.

17.

Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation.

Mathieu O, Reinders J, Caikovski M, Smathajitt C, Paszkowski J.

Cell. 2007 Sep 7;130(5):851-62.

18.

The SRA methyl-cytosine-binding domain links DNA and histone methylation.

Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE.

Curr Biol. 2007 Feb 20;17(4):379-84. Epub 2007 Jan 18.

19.

MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant.

Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC.

Genome Res. 2006 Oct;16(10):1276-88. Epub 2006 Sep 5.

20.

RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis.

Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE.

PLoS Genet. 2006 Jun 2;2(6):e83.

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