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Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis.

Saecker RM, Record MT Jr, Dehaseth PL.

J Mol Biol. 2011 Oct 7;412(5):754-71. doi: 10.1016/j.jmb.2011.01.018. Epub 2011 Mar 1.


Evolution of multisubunit RNA polymerases in the three domains of life.

Werner F, Grohmann D.

Nat Rev Microbiol. 2011 Feb;9(2):85-98. doi: 10.1038/nrmicro2507. Review.


Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry.

Chen ZA, Jawhari A, Fischer L, Buchen C, Tahir S, Kamenski T, Rasmussen M, Lariviere L, Bukowski-Wills JC, Nilges M, Cramer P, Rappsilber J.

EMBO J. 2010 Feb 17;29(4):717-26. doi: 10.1038/emboj.2009.401. Epub 2010 Jan 21.


Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex.

Eichner J, Chen HT, Warfield L, Hahn S.

EMBO J. 2010 Feb 17;29(4):706-16. doi: 10.1038/emboj.2009.386. Epub 2009 Dec 24.


Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.

Liu X, Bushnell DA, Wang D, Calero G, Kornberg RD.

Science. 2010 Jan 8;327(5962):206-9. doi: 10.1126/science.1182015. Epub 2009 Nov 12.


Molecular evolution of multisubunit RNA polymerases: structural analysis.

Lane WJ, Darst SA.

J Mol Biol. 2010 Jan 29;395(4):686-704. doi: 10.1016/j.jmb.2009.10.063. Epub 2009 Nov 3.


RNA polymerase II-TFIIB structure and mechanism of transcription initiation.

Kostrewa D, Zeller ME, Armache KJ, Seizl M, Leike K, Thomm M, Cramer P.

Nature. 2009 Nov 19;462(7271):323-30. doi: 10.1038/nature08548.


Minimal promoter systems reveal the importance of conserved residues in the B-finger of human transcription factor IIB.

Thompson NE, Glaser BT, Foley KM, Burton ZF, Burgess RR.

J Biol Chem. 2009 Sep 11;284(37):24754-66. doi: 10.1074/jbc.M109.030486. Epub 2009 Jul 9.


Structure of eukaryotic RNA polymerases.

Cramer P, Armache KJ, Baumli S, Benkert S, Brueckner F, Buchen C, Damsma GE, Dengl S, Geiger SR, Jasiak AJ, Jawhari A, Jennebach S, Kamenski T, Kettenberger H, Kuhn CD, Lehmann E, Leike K, Sydow JF, Vannini A.

Annu Rev Biophys. 2008;37:337-52. doi: 10.1146/annurev.biophys.37.032807.130008. Review.


Control of the timing of promoter escape and RNA catalysis by the transcription factor IIb fingertip.

Tran K, Gralla JD.

J Biol Chem. 2008 Jun 6;283(23):15665-71. doi: 10.1074/jbc.M801439200. Epub 2008 Apr 14.


The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex.

Chen HT, Warfield L, Hahn S.

Nat Struct Mol Biol. 2007 Aug;14(8):696-703. Epub 2007 Jul 15.


The general transcription machinery and general cofactors.

Thomas MC, Chiang CM.

Crit Rev Biochem Mol Biol. 2006 May-Jun;41(3):105-78. Review.


A DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex.

Miller G, Hahn S.

Nat Struct Mol Biol. 2006 Jul;13(7):603-10. Epub 2006 Jul 2.


Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model.

Kuehner JN, Brow DA.

J Biol Chem. 2006 May 19;281(20):14119-28. Epub 2006 Mar 29.


Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE.

Zhang Z, Dietrich FS.

Nucleic Acids Res. 2005 May 19;33(9):2838-51. Print 2005.


Structure and mechanism of the RNA polymerase II transcription machinery.

Hahn S.

Nat Struct Mol Biol. 2004 May;11(5):394-403. Review.


Protein-protein interactions mapped by artificial proteases: where sigma factors bind to RNA polymerase.

Datwyler SA, Meares CF.

Trends Biochem Sci. 2000 Sep;25(9):408-14. Erratum in: Trends Biochem Sci 2000 Oct;25(10):468.


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