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Items: 1 to 20 of 78


Analyzing protein-protein interactions by quantitative mass spectrometry.

Paul FE, Hosp F, Selbach M.

Methods. 2011 Aug;54(4):387-95. doi: 10.1016/j.ymeth.2011.03.001. Epub 2011 Mar 5. Review.


SAINT: probabilistic scoring of affinity purification-mass spectrometry data.

Choi H, Larsen B, Lin ZY, Breitkreutz A, Mellacheruvu D, Fermin D, Qin ZS, Tyers M, Gingras AC, Nesvizhskii AI.

Nat Methods. 2011 Jan;8(1):70-3. doi: 10.1038/nmeth.1541. Epub 2010 Dec 5.


Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.

Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M.

Cell. 2010 Sep 17;142(6):967-80. doi: 10.1016/j.cell.2010.08.020.


A global protein kinase and phosphatase interaction network in yeast.

Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, Larsen B, Lin ZY, Breitkreutz BJ, Stark C, Liu G, Ahn J, Dewar-Darch D, Reguly T, Tang X, Almeida R, Qin ZS, Pawson T, Gingras AC, Nesvizhskii AI, Tyers M.

Science. 2010 May 21;328(5981):1043-6. doi: 10.1126/science.1176495.


Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions.

Hubner NC, Bird AW, Cox J, Splettstoesser B, Bandilla P, Poser I, Hyman A, Mann M.

J Cell Biol. 2010 May 17;189(4):739-54. doi: 10.1083/jcb.200911091.


A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency.

Mak AB, Ni Z, Hewel JA, Chen GI, Zhong G, Karamboulas K, Blakely K, Smiley S, Marcon E, Roudeva D, Li J, Olsen JB, Wan C, Punna T, Isserlin R, Chetyrkin S, Gingras AC, Emili A, Greenblatt J, Moffat J.

Mol Cell Proteomics. 2010 May;9(5):811-23. doi: 10.1074/mcp.M000002-MCP201. Epub 2010 Mar 19.


MAP3K1 functionally interacts with Axin1 in the canonical Wnt signalling pathway.

Sue Ng S, Mahmoudi T, Li VS, Hatzis P, Boersema PJ, Mohammed S, Heck AJ, Clevers H.

Biol Chem. 2010 Feb-Mar;391(2-3):171-80. doi: 10.1515/BC.2010.028.


Establishment of a protein frequency library and its application in the reliable identification of specific protein interaction partners.

Boulon S, Ahmad Y, Trinkle-Mulcahy L, Verheggen C, Cobley A, Gregor P, Bertrand E, Whitehorn M, Lamond AI.

Mol Cell Proteomics. 2010 May;9(5):861-79. doi: 10.1074/mcp.M900517-MCP200. Epub 2009 Dec 20.


A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

Olsen JV, Schwartz JC, Griep-Raming J, Nielsen ML, Damoc E, Denisov E, Lange O, Remes P, Taylor D, Splendore M, Wouters ER, Senko M, Makarov A, Mann M, Horning S.

Mol Cell Proteomics. 2009 Dec;8(12):2759-69. doi: 10.1074/mcp.M900375-MCP200. Epub 2009 Oct 14.


Towards an integrated view of Wnt signaling in development.

van Amerongen R, Nusse R.

Development. 2009 Oct;136(19):3205-14. doi: 10.1242/dev.033910. Review.


Wnt/beta-catenin signaling: components, mechanisms, and diseases.

MacDonald BT, Tamai K, He X.

Dev Cell. 2009 Jul;17(1):9-26. doi: 10.1016/j.devcel.2009.06.016. Review.


Defining the human deubiquitinating enzyme interaction landscape.

Sowa ME, Bennett EJ, Gygi SP, Harper JW.

Cell. 2009 Jul 23;138(2):389-403. doi: 10.1016/j.cell.2009.04.042. Epub 2009 Jul 16.


Proximal events in Wnt signal transduction.

Angers S, Moon RT.

Nat Rev Mol Cell Biol. 2009 Jul;10(7):468-77. doi: 10.1038/nrm2717. Review.


Host cell interactome of tyrosine-phosphorylated bacterial proteins.

Selbach M, Paul FE, Brandt S, Guye P, Daumke O, Backert S, Dehio C, Mann M.

Cell Host Microbe. 2009 Apr 23;5(4):397-403. doi: 10.1016/j.chom.2009.03.004.


A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics.

Cox J, Matic I, Hilger M, Nagaraj N, Selbach M, Olsen JV, Mann M.

Nat Protoc. 2009;4(5):698-705. doi: 10.1038/nprot.2009.36.


Quantitative interaction proteomics using mass spectrometry.

Wepf A, Glatter T, Schmidt A, Aebersold R, Gstaiger M.

Nat Methods. 2009 Mar;6(3):203-5. doi: 10.1038/nmeth.1302. Epub 2009 Feb 8.


AmiGO: online access to ontology and annotation data.

Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S; AmiGO Hub; Web Presence Working Group.

Bioinformatics. 2009 Jan 15;25(2):288-9. doi: 10.1093/bioinformatics/btn615. Epub 2008 Nov 25.


MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.

Cox J, Mann M.

Nat Biotechnol. 2008 Dec;26(12):1367-72. doi: 10.1038/nbt.1511. Epub 2008 Nov 30.


New regulators of Wnt/beta-catenin signaling revealed by integrative molecular screening.

Major MB, Roberts BS, Berndt JD, Marine S, Anastas J, Chung N, Ferrer M, Yi X, Stoick-Cooper CL, von Haller PD, Kategaya L, Chien A, Angers S, MacCoss M, Cleary MA, Arthur WT, Moon RT.

Sci Signal. 2008 Nov 11;1(45):ra12. doi: 10.1126/scisignal.2000037.


Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes.

Trinkle-Mulcahy L, Boulon S, Lam YW, Urcia R, Boisvert FM, Vandermoere F, Morrice NA, Swift S, Rothbauer U, Leonhardt H, Lamond A.

J Cell Biol. 2008 Oct 20;183(2):223-39. doi: 10.1083/jcb.200805092.

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