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Items: 1 to 20 of 37

1.

Discriminative motif finding for predicting protein subcellular localization.

Lin TH, Murphy RF, Bar-Joseph Z.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Mar-Apr;8(2):441-51. doi: 10.1109/TCBB.2009.82.

2.

Automated Analysis of Human Protein Atlas Immunofluorescence Images.

Newberg JY, Li J, Rao A, Pontén F, Uhlén M, Lundberg E, Murphy RF.

Proc IEEE Int Symp Biomed Imaging. 2009;5193229:1023-1026.

3.

Machine learning methods for metabolic pathway prediction.

Dale JM, Popescu L, Karp PD.

BMC Bioinformatics. 2010 Jan 8;11:15. doi: 10.1186/1471-2105-11-15.

4.

Dynamic proteomics of individual cancer cells in response to a drug.

Cohen AA, Geva-Zatorsky N, Eden E, Frenkel-Morgenstern M, Issaeva I, Sigal A, Milo R, Cohen-Saidon C, Liron Y, Kam Z, Cohen L, Danon T, Perzov N, Alon U.

Science. 2008 Dec 5;322(5907):1511-6. doi: 10.1126/science.1160165. Epub 2008 Nov 20.

5.

Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species.

Lee K, Chuang HY, Beyer A, Sung MK, Huh WK, Lee B, Ideker T.

Nucleic Acids Res. 2008 Nov;36(20):e136. doi: 10.1093/nar/gkn619. Epub 2008 Oct 4.

6.

Rapidly exploring structural and dynamic properties of signaling networks using PathwayOracle.

Ruths D, Nakhleh L, Ram PT.

BMC Syst Biol. 2008 Aug 19;2:76. doi: 10.1186/1752-0509-2-76.

7.

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms.

Chou KC, Shen HB.

Nat Protoc. 2008;3(2):153-62. doi: 10.1038/nprot.2007.494.

PMID:
18274516
8.

Toward a confocal subcellular atlas of the human proteome.

Barbe L, Lundberg E, Oksvold P, Stenius A, Lewin E, Björling E, Asplund A, Pontén F, Brismar H, Uhlén M, Andersson-Svahn H.

Mol Cell Proteomics. 2008 Mar;7(3):499-508. Epub 2007 Nov 19.

11.
12.

Automated image analysis of protein localization in budding yeast.

Chen SC, Zhao T, Gordon GJ, Murphy RF.

Bioinformatics. 2007 Jul 1;23(13):i66-71.

PMID:
17646347
13.

WoLF PSORT: protein localization predictor.

Horton P, Park KJ, Obayashi T, Fujita N, Harada H, Adams-Collier CJ, Nakai K.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W585-7. Epub 2007 May 21.

14.

Locating proteins in the cell using TargetP, SignalP and related tools.

Emanuelsson O, Brunak S, von Heijne G, Nielsen H.

Nat Protoc. 2007;2(4):953-71.

PMID:
17446895
15.

SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data.

Shatkay H, Höglund A, Brady S, Blum T, Dönnes P, Kohlbacher O.

Bioinformatics. 2007 Jun 1;23(11):1410-7. Epub 2007 Mar 28.

PMID:
17392328
16.

Large-scale automated analysis of location patterns in randomly tagged 3T3 cells.

García Osuna E, Hua J, Bateman NW, Zhao T, Berget PB, Murphy RF.

Ann Biomed Eng. 2007 Jun;35(6):1081-7. Epub 2007 Feb 7.

17.
18.

BaCelLo: a balanced subcellular localization predictor.

Pierleoni A, Martelli PL, Fariselli P, Casadio R.

Bioinformatics. 2006 Jul 15;22(14):e408-16.

PMID:
16873501
19.

Efficient algorithms for detecting signaling pathways in protein interaction networks.

Scott J, Ideker T, Karp RM, Sharan R.

J Comput Biol. 2006 Mar;13(2):133-44.

PMID:
16597231
20.

BioGRID: a general repository for interaction datasets.

Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D535-9.

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