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Items: 1 to 20 of 47

1.

The specificity and topology of chromatin interaction pathways in yeast.

Lenstra TL, Benschop JJ, Kim T, Schulze JM, Brabers NA, Margaritis T, van de Pasch LA, van Heesch SA, Brok MO, Groot Koerkamp MJ, Ko CW, van Leenen D, Sameith K, van Hooff SR, Lijnzaad P, Kemmeren P, Hentrich T, Kobor MS, Buratowski S, Holstege FC.

Mol Cell. 2011 May 20;42(4):536-49. doi: 10.1016/j.molcel.2011.03.026.

2.

Functional overlap and regulatory links shape genetic interactions between signaling pathways.

van Wageningen S, Kemmeren P, Lijnzaad P, Margaritis T, Benschop JJ, de Castro IJ, van Leenen D, Groot Koerkamp MJ, Ko CW, Miles AJ, Brabers N, Brok MO, Lenstra TL, Fiedler D, Fokkens L, Aldecoa R, Apweiler E, Taliadouros V, Sameith K, van de Pasch LA, van Hooff SR, Bakker LV, Krogan NJ, Snel B, Holstege FC.

Cell. 2010 Dec 10;143(6):991-1004. doi: 10.1016/j.cell.2010.11.021.

3.

The structural plasticity of SCA7 domains defines their differential nucleosome-binding properties.

Bonnet J, Wang YH, Spedale G, Atkinson RA, Romier C, Hamiche A, Pijnappel WW, Timmers HT, Tora L, Devys D, Kieffer B.

EMBO Rep. 2010 Aug;11(8):612-8. doi: 10.1038/embor.2010.98.

4.

The nuclear pore complex and nuclear transport.

Wente SR, Rout MP.

Cold Spring Harb Perspect Biol. 2010 Oct;2(10):a000562. doi: 10.1101/cshperspect.a000562. Review.

5.

Identification of Pep4p as the protease responsible for formation of the SAGA-related SLIK protein complex.

Spedale G, Mischerikow N, Heck AJ, Timmers HT, Pijnappel WW.

J Biol Chem. 2010 Jul 23;285(30):22793-9. doi: 10.1074/jbc.M110.108787.

6.

Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome.

van Werven FJ, van Teeffelen HA, Holstege FC, Timmers HT.

Nat Struct Mol Biol. 2009 Oct;16(10):1043-8. doi: 10.1038/nsmb.1674.

PMID:
19767748
7.

The basal initiation machinery: beyond the general transcription factors.

Sikorski TW, Buratowski S.

Curr Opin Cell Biol. 2009 Jun;21(3):344-51. doi: 10.1016/j.ceb.2009.03.006. Review.

8.

Adaptable gene-specific dye bias correction for two-channel DNA microarrays.

Margaritis T, Lijnzaad P, van Leenen D, Bouwmeester D, Kemmeren P, van Hooff SR, Holstege FC.

Mol Syst Biol. 2009;5:266. doi: 10.1038/msb.2009.21.

9.

Ctk1 promotes dissociation of basal transcription factors from elongating RNA polymerase II.

Ahn SH, Keogh MC, Buratowski S.

EMBO J. 2009 Feb 4;28(3):205-12. doi: 10.1038/emboj.2008.280.

10.
11.

The anchor-away technique: rapid, conditional establishment of yeast mutant phenotypes.

Haruki H, Nishikawa J, Laemmli UK.

Mol Cell. 2008 Sep 26;31(6):925-32. doi: 10.1016/j.molcel.2008.07.020.

12.

Regulation of TATA-binding protein dynamics in living yeast cells.

Sprouse RO, Karpova TS, Mueller F, Dasgupta A, McNally JG, Auble DT.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13304-8. doi: 10.1073/pnas.0801901105.

13.

TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription.

Hsu JY, Juven-Gershon T, Marr MT 2nd, Wright KJ, Tjian R, Kadonaga JT.

Genes Dev. 2008 Sep 1;22(17):2353-8. doi: 10.1101/gad.1681808.

14.

Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome.

van Werven FJ, van Bakel H, van Teeffelen HA, Altelaar AF, Koerkamp MG, Heck AJ, Holstege FC, Timmers HT.

Genes Dev. 2008 Sep 1;22(17):2359-69. doi: 10.1101/gad.1682308.

15.

Dissection of coactivator requirement at RNR3 reveals unexpected contributions from TFIID and SAGA.

Zhang H, Kruk JA, Reese JC.

J Biol Chem. 2008 Oct 10;283(41):27360-8. doi: 10.1074/jbc.M803831200.

16.

The dual control of TFIIB recruitment by NC2 is gene specific.

Masson P, Leimgruber E, Creton S, Collart MA.

Nucleic Acids Res. 2008 Feb;36(2):539-49.

17.

NC2 mobilizes TBP on core promoter TATA boxes.

Schluesche P, Stelzer G, Piaia E, Lamb DC, Meisterernst M.

Nat Struct Mol Biol. 2007 Dec;14(12):1196-201.

PMID:
17994103
18.

DNA double-strand breaks trigger genome-wide sister-chromatid cohesion through Eco1 (Ctf7).

Unal E, Heidinger-Pauli JM, Koshland D.

Science. 2007 Jul 13;317(5835):245-8. Erratum in: Science. 2007 Dec 14;318(5857):1722.

19.

Snf2/Swi2-related ATPase Mot1 drives displacement of TATA-binding protein by gripping DNA.

Sprouse RO, Brenowitz M, Auble DT.

EMBO J. 2006 Apr 5;25(7):1492-504.

20.

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