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Items: 1 to 20 of 59

1.

Molecular adaptation in flowering and symbiotic recognition pathways: insights from patterns of polymorphism in the legume Medicago truncatula.

De Mita S, Chantret N, Loridon K, Ronfort J, Bataillon T.

BMC Evol Biol. 2011 Aug 1;11:229. doi: 10.1186/1471-2148-11-229.

2.

Genome-wide association study of leaf architecture in the maize nested association mapping population.

Tian F, Bradbury PJ, Brown PJ, Hung H, Sun Q, Flint-Garcia S, Rocheford TR, McMullen MD, Holland JB, Buckler ES.

Nat Genet. 2011 Feb;43(2):159-62. doi: 10.1038/ng.746. Epub 2011 Jan 9.

PMID:
21217756
3.

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection.

Lam HM, Xu X, Liu X, Chen W, Yang G, Wong FL, Li MW, He W, Qin N, Wang B, Li J, Jian M, Wang J, Shao G, Wang J, Sun SS, Zhang G.

Nat Genet. 2010 Dec;42(12):1053-9. doi: 10.1038/ng.715. Epub 2010 Nov 14. Erratum in: Nat Genet. 2011;43(4):387.

PMID:
21076406
4.

Genome-wide association studies of 14 agronomic traits in rice landraces.

Huang X, Wei X, Sang T, Zhao Q, Feng Q, Zhao Y, Li C, Zhu C, Lu T, Zhang Z, Li M, Fan D, Guo Y, Wang A, Wang L, Deng L, Li W, Lu Y, Weng Q, Liu K, Huang T, Zhou T, Jing Y, Li W, Lin Z, Buckler ES, Qian Q, Zhang QF, Li J, Han B.

Nat Genet. 2010 Nov;42(11):961-7. doi: 10.1038/ng.695. Epub 2010 Oct 24.

PMID:
20972439
5.

Conditions under which genome-wide association studies will be positively misleading.

Platt A, Vilhjálmsson BJ, Nordborg M.

Genetics. 2010 Nov;186(3):1045-52. doi: 10.1534/genetics.110.121665. Epub 2010 Sep 2.

6.

Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation.

Friesen ML, Cordeiro MA, Penmetsa RV, Badri M, Huguet T, Aouani ME, Cook DR, Nuzhdin SV.

Plant J. 2010 Aug;63(4):623-35. doi: 10.1111/j.1365-313X.2010.04267.x.

7.

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M.

Nature. 2010 Jun 3;465(7298):627-31. doi: 10.1038/nature08800. Epub 2010 Mar 24.

8.

Genetic hitchhiking versus background selection: the controversy and its implications.

Stephan W.

Philos Trans R Soc Lond B Biol Sci. 2010 Apr 27;365(1544):1245-53. doi: 10.1098/rstb.2009.0278. Review.

9.

Plant peptides govern terminal differentiation of bacteria in symbiosis.

Van de Velde W, Zehirov G, Szatmari A, Debreczeny M, Ishihara H, Kevei Z, Farkas A, Mikulass K, Nagy A, Tiricz H, Satiat-Jeunemaître B, Alunni B, Bourge M, Kucho K, Abe M, Kereszt A, Maroti G, Uchiumi T, Kondorosi E, Mergaert P.

Science. 2010 Feb 26;327(5969):1122-6. doi: 10.1126/science.1184057.

10.

Fast and SNP-tolerant detection of complex variants and splicing in short reads.

Wu TD, Nacu S.

Bioinformatics. 2010 Apr 1;26(7):873-81. doi: 10.1093/bioinformatics/btq057. Epub 2010 Feb 10.

11.

Rare variants create synthetic genome-wide associations.

Dickson SP, Wang K, Krantz I, Hakonarson H, Goldstein DB.

PLoS Biol. 2010 Jan 26;8(1):e1000294. doi: 10.1371/journal.pbio.1000294.

12.

Nucleotide diversity and linkage disequilibrium in balsam poplar (Populus balsamifera).

Olson MS, Robertson AL, Takebayashi N, Silim S, Schroeder WR, Tiffin P.

New Phytol. 2010 Apr;186(2):526-36. doi: 10.1111/j.1469-8137.2009.03174.x. Epub 2010 Jan 28.

13.

A first-generation haplotype map of maize.

Gore MA, Chia JM, Elshire RJ, Sun Q, Ersoz ES, Hurwitz BL, Peiffer JA, McMullen MD, Grills GS, Ross-Ibarra J, Ware DH, Buckler ES.

Science. 2009 Nov 20;326(5956):1115-7. doi: 10.1126/science.1177837.

14.

A single molecule scaffold for the maize genome.

Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, Livny M, Schwartz DC.

PLoS Genet. 2009 Nov;5(11):e1000711. doi: 10.1371/journal.pgen.1000711. Epub 2009 Nov 20.

15.

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice.

McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, Bustamante CD, Weigel D, Mackill DJ, Bruskiewich RM, Rätsch G, Buell CR, Leung H, Leach JE.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12273-8. doi: 10.1073/pnas.0900992106. Epub 2009 Jul 13.

16.

Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10.

Tian F, Stevens NM, Buckler ES 4th.

Proc Natl Acad Sci U S A. 2009 Jun 16;106 Suppl 1:9979-86. doi: 10.1073/pnas.0901122106. Epub 2009 Jun 15. Review.

17.

Translating Medicago truncatula genomics to crop legumes.

Young ND, Udvardi M.

Curr Opin Plant Biol. 2009 Apr;12(2):193-201. doi: 10.1016/j.pbi.2008.11.005. Epub 2009 Jan 21. Review.

PMID:
19162532
18.

Conditional neutrality at two adjacent NBS-LRR disease resistance loci in natural populations of Arabidopsis lyrata.

Gos G, Wright SI.

Mol Ecol. 2008 Dec;17(23):4953-62. doi: 10.1111/j.1365-294X.2008.03968.x. Epub 2008 Nov 4.

PMID:
18992006
19.

Accurate whole human genome sequencing using reversible terminator chemistry.

Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, Ellis DJ, Flatbush MR, Gormley NA, Humphray SJ, Irving LJ, Karbelashvili MS, Kirk SM, Li H, Liu X, Maisinger KS, Murray LJ, Obradovic B, Ost T, Parkinson ML, Pratt MR, Rasolonjatovo IM, Reed MT, Rigatti R, Rodighiero C, Ross MT, Sabot A, Sankar SV, Scally A, Schroth GP, Smith ME, Smith VP, Spiridou A, Torrance PE, Tzonev SS, Vermaas EH, Walter K, Wu X, Zhang L, Alam MD, Anastasi C, Aniebo IC, Bailey DM, Bancarz IR, Banerjee S, Barbour SG, Baybayan PA, Benoit VA, Benson KF, Bevis C, Black PJ, Boodhun A, Brennan JS, Bridgham JA, Brown RC, Brown AA, Buermann DH, Bundu AA, Burrows JC, Carter NP, Castillo N, Chiara E Catenazzi M, Chang S, Neil Cooley R, Crake NR, Dada OO, Diakoumakos KD, Dominguez-Fernandez B, Earnshaw DJ, Egbujor UC, Elmore DW, Etchin SS, Ewan MR, Fedurco M, Fraser LJ, Fuentes Fajardo KV, Scott Furey W, George D, Gietzen KJ, Goddard CP, Golda GS, Granieri PA, Green DE, Gustafson DL, Hansen NF, Harnish K, Haudenschild CD, Heyer NI, Hims MM, Ho JT, Horgan AM, Hoschler K, Hurwitz S, Ivanov DV, Johnson MQ, James T, Huw Jones TA, Kang GD, Kerelska TH, Kersey AD, Khrebtukova I, Kindwall AP, Kingsbury Z, Kokko-Gonzales PI, Kumar A, Laurent MA, Lawley CT, Lee SE, Lee X, Liao AK, Loch JA, Lok M, Luo S, Mammen RM, Martin JW, McCauley PG, McNitt P, Mehta P, Moon KW, Mullens JW, Newington T, Ning Z, Ling Ng B, Novo SM, O'Neill MJ, Osborne MA, Osnowski A, Ostadan O, Paraschos LL, Pickering L, Pike AC, Pike AC, Chris Pinkard D, Pliskin DP, Podhasky J, Quijano VJ, Raczy C, Rae VH, Rawlings SR, Chiva Rodriguez A, Roe PM, Rogers J, Rogert Bacigalupo MC, Romanov N, Romieu A, Roth RK, Rourke NJ, Ruediger ST, Rusman E, Sanches-Kuiper RM, Schenker MR, Seoane JM, Shaw RJ, Shiver MK, Short SW, Sizto NL, Sluis JP, Smith MA, Ernest Sohna Sohna J, Spence EJ, Stevens K, Sutton N, Szajkowski L, Tregidgo CL, Turcatti G, Vandevondele S, Verhovsky Y, Virk SM, Wakelin S, Walcott GC, Wang J, Worsley GJ, Yan J, Yau L, Zuerlein M, Rogers J, Mullikin JC, Hurles ME, McCooke NJ, West JS, Oaks FL, Lundberg PL, Klenerman D, Durbin R, Smith AJ.

Nature. 2008 Nov 6;456(7218):53-9. doi: 10.1038/nature07517.

20.

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals.

Hellmann I, Mang Y, Gu Z, Li P, de la Vega FM, Clark AG, Nielsen R.

Genome Res. 2008 Jul;18(7):1020-9. doi: 10.1101/gr.074187.107. Epub 2008 Apr 14.

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