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Membrane delivery to the yeast autophagosome from the Golgi-endosomal system.

Ohashi Y, Munro S.

Mol Biol Cell. 2010 Nov 15;21(22):3998-4008. doi: 10.1091/mbc.E10-05-0457. Epub 2010 Sep 22.


Identification of a key residue determining substrate affinity in the yeast glucose transporter Hxt7: a two-dimensional comprehensive study.

Kasahara T, Kasahara M.

J Biol Chem. 2010 Aug 20;285(34):26263-8. doi: 10.1074/jbc.M110.149716. Epub 2010 Jun 4.


Nutrient control of eukaryote cell growth: a systems biology study in yeast.

Gutteridge A, Pir P, Castrillo JI, Charles PD, Lilley KS, Oliver SG.

BMC Biol. 2010 May 24;8:68. doi: 10.1186/1741-7007-8-68.


AmiGO: online access to ontology and annotation data.

Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S; AmiGO Hub; Web Presence Working Group.

Bioinformatics. 2009 Jan 15;25(2):288-9. doi: 10.1093/bioinformatics/btn615. Epub 2008 Nov 25.


Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: a three factor design.

Fazio A, Jewett MC, Daran-Lapujade P, Mustacchi R, Usaite R, Pronk JT, Workman CT, Nielsen J.

BMC Genomics. 2008 Jul 18;9:341. doi: 10.1186/1471-2164-9-341.


Growth control of the eukaryote cell: a systems biology study in yeast.

Castrillo JI, Zeef LA, Hoyle DC, Zhang N, Hayes A, Gardner DC, Cornell MJ, Petty J, Hakes L, Wardleworth L, Rash B, Brown M, Dunn WB, Broadhurst D, O'Donoghue K, Hester SS, Dunkley TP, Hart SR, Swainston N, Li P, Gaskell SJ, Paton NW, Lilley KS, Kell DB, Oliver SG.

J Biol. 2007;6(2):4. doi: 10.1186/jbiol54.


Reconstructing dynamic regulatory maps.

Ernst J, Vainas O, Harbison CT, Simon I, Bar-Joseph Z.

Mol Syst Biol. 2007;3:74. Epub 2007 Jan 16.


Identification of the proliferation/differentiation switch in the cellular network of multicellular organisms.

Xia K, Xue H, Dong D, Zhu S, Wang J, Zhang Q, Hou L, Chen H, Tao R, Huang Z, Fu Z, Chen YG, Han JD.

PLoS Comput Biol. 2006 Nov 24;2(11):e145.


When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation.

Kresnowati MT, van Winden WA, Almering MJ, ten Pierick A, Ras C, Knijnenburg TA, Daran-Lapujade P, Pronk JT, Heijnen JJ, Daran JM.

Mol Syst Biol. 2006;2:49. Epub 2006 Sep 12.


The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments.

Storey JD, Dai JY, Leek JT.

Biostatistics. 2007 Apr;8(2):414-32. Epub 2006 Aug 23.


An improved map of conserved regulatory sites for Saccharomyces cerevisiae.

MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E.

BMC Bioinformatics. 2006 Mar 7;7:113.


The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.

Teixeira MC, Monteiro P, Jain P, Tenreiro S, Fernandes AR, Mira NP, Alenquer M, Freitas AT, Oliveira AL, Sá-Correia I.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D446-51.


Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source.

Ronen M, Botstein D.

Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):389-94. Epub 2005 Dec 28.


EDGE: extraction and analysis of differential gene expression.

Leek JT, Monsen E, Dabney AR, Storey JD.

Bioinformatics. 2006 Feb 15;22(4):507-8. Epub 2005 Dec 15. Erratum in: Bioinformatics. 2006 Jun 1;22(11):1412.


Profiling condition-specific, genome-wide regulation of mRNA stability in yeast.

Foat BC, Houshmandi SS, Olivas WM, Bussemaker HJ.

Proc Natl Acad Sci U S A. 2005 Dec 6;102(49):17675-80. Epub 2005 Nov 29.


Significance analysis of time course microarray experiments.

Storey JD, Xiao W, Leek JT, Tompkins RG, Davis RW.

Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12837-42. Epub 2005 Sep 2.


Context-dependent codon bias and messenger RNA longevity in the yeast transcriptome.

Carlini DB.

Mol Biol Evol. 2005 Jun;22(6):1403-11. Epub 2005 Mar 16.


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