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Items: 1 to 20 of 37

1.

Consistency of predictive signature genes and classifiers generated using different microarray platforms.

Fan X, Lobenhofer EK, Chen M, Shi W, Huang J, Luo J, Zhang J, Walker SJ, Chu TM, Li L, Wolfinger R, Bao W, Paules RS, Bushel PR, Li J, Shi T, Nikolskaya T, Nikolsky Y, Hong H, Deng Y, Cheng Y, Fang H, Shi L, Tong W.

Pharmacogenomics J. 2010 Aug;10(4):247-57. doi: 10.1038/tpj.2010.34.

2.

Performance of feature selection methods.

Dougherty ER, Hua J, Sima C.

Curr Genomics. 2009 Sep;10(6):365-74. doi: 10.2174/138920209789177629.

3.

Mechanisms of immune-mediated liver injury.

Adams DH, Ju C, Ramaiah SK, Uetrecht J, Jaeschke H.

Toxicol Sci. 2010 Jun;115(2):307-21. doi: 10.1093/toxsci/kfq009. Epub 2010 Jan 13. Review.

4.

An investigation into the population abundance distribution of mRNAs, proteins, and metabolites in biological systems.

Lu C, King RD.

Bioinformatics. 2009 Aug 15;25(16):2020-7. doi: 10.1093/bioinformatics/btp360. Epub 2009 Jun 17.

PMID:
19535531
5.

Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data.

Liu J, Campen A, Huang S, Peng SB, Ye X, Palakal M, Dunker AK, Xia Y, Li S.

BMC Med Genomics. 2008 Sep 11;1:39. doi: 10.1186/1755-8794-1-39.

6.

Strategic applications of toxicogenomics in early drug discovery.

Ryan TP, Stevens JL, Thomas CE.

Curr Opin Pharmacol. 2008 Oct;8(5):654-60. doi: 10.1016/j.coph.2008.07.011. Epub 2008 Sep 17. Review.

PMID:
18760379
7.

Discriminating the molecular basis of hepatotoxicity using the large-scale characteristic molecular signatures of toxicants by expression profiling analysis.

Eun JW, Ryu SY, Noh JH, Lee MJ, Jang JJ, Ryu JC, Jung KH, Kim JK, Bae HJ, Xie H, Kim SY, Lee SH, Park WS, Yoo NJ, Lee JY, Nam SW.

Toxicology. 2008 Jul 30;249(2-3):176-83. doi: 10.1016/j.tox.2008.05.001. Epub 2008 May 14.

PMID:
18579281
8.

The liver pharmacological and xenobiotic gene response repertoire.

Natsoulis G, Pearson CI, Gollub J, P Eynon B, Ferng J, Nair R, Idury R, Lee MD, Fielden MR, Brennan RJ, Roter AH, Jarnagin K.

Mol Syst Biol. 2008;4:175. doi: 10.1038/msb.2008.9. Epub 2008 Mar 25.

9.

The current state of serum biomarkers of hepatotoxicity.

Ozer J, Ratner M, Shaw M, Bailey W, Schomaker S.

Toxicology. 2008 Mar 20;245(3):194-205. doi: 10.1016/j.tox.2007.11.021. Epub 2007 Dec 5. Review.

PMID:
18291570
10.

Genomic and genetic biomarkers of toxicity.

Mendrick DL.

Toxicology. 2008 Mar 20;245(3):175-81. doi: 10.1016/j.tox.2007.11.013. Epub 2007 Nov 28. Review.

PMID:
18206287
11.

Xenoreceptors CAR and PXR activation and consequences on lipid metabolism, glucose homeostasis, and inflammatory response.

Moreau A, Vilarem MJ, Maurel P, Pascussi JM.

Mol Pharm. 2008 Jan-Feb;5(1):35-41. Epub 2007 Dec 27. Review.

PMID:
18159929
12.

Blood gene expression signatures predict exposure levels.

Bushel PR, Heinloth AN, Li J, Huang L, Chou JW, Boorman GA, Malarkey DE, Houle CD, Ward SM, Wilson RE, Fannin RD, Russo MW, Watkins PB, Tennant RW, Paules RS.

Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):18211-6. Epub 2007 Nov 2.

13.

A review of feature selection techniques in bioinformatics.

Saeys Y, Inza I, Larra├▒aga P.

Bioinformatics. 2007 Oct 1;23(19):2507-17. Epub 2007 Aug 24. Review.

PMID:
17720704
14.

Acute hepatotoxicity: a predictive model based on focused illumina microarrays.

Zidek N, Hellmann J, Kramer PJ, Hewitt PG.

Toxicol Sci. 2007 Sep;99(1):289-302. Epub 2007 May 22.

PMID:
17522070
15.

Preclinical predictors of clinical safety: opportunities for improvement.

Sistare FD, DeGeorge JJ.

Clin Pharmacol Ther. 2007 Aug;82(2):210-4. Epub 2007 May 16. Review.

PMID:
17507920
16.

Validation of rat reference genes for improved quantitative gene expression analysis using low density arrays.

Cai JH, Deng S, Kumpf SW, Lee PA, Zagouras P, Ryan A, Gallagher DS.

Biotechniques. 2007 Apr;42(4):503-12.

17.

Relaxing the rule of ten events per variable in logistic and Cox regression.

Vittinghoff E, McCulloch CE.

Am J Epidemiol. 2007 Mar 15;165(6):710-8. Epub 2006 Dec 20.

PMID:
17182981
18.

Concordance among gene-expression-based predictors for breast cancer.

Fan C, Oh DS, Wessels L, Weigelt B, Nuyten DS, Nobel AB, van't Veer LJ, Perou CM.

N Engl J Med. 2006 Aug 10;355(6):560-9.

19.

Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data.

Zhang X, Lu X, Shi Q, Xu XQ, Leung HC, Harris LN, Iglehart JD, Miron A, Liu JS, Wong WH.

BMC Bioinformatics. 2006 Apr 10;7:197.

20.

Proteome survey reveals modularity of the yeast cell machinery.

Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, D├╝mpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Schelder M, Schirle M, Remor M, Rudi T, Hooper S, Bauer A, Bouwmeester T, Casari G, Drewes G, Neubauer G, Rick JM, Kuster B, Bork P, Russell RB, Superti-Furga G.

Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.

PMID:
16429126

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