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Items: 18

1.

Gas chromatography-mass spectrometry (GC-MS)-based metabolomics.

Garcia A, Barbas C.

Methods Mol Biol. 2011;708:191-204. doi: 10.1007/978-1-61737-985-7_11.

PMID:
21207291
2.

Direct infusion mass spectrometry or liquid chromatography mass spectrometry for human metabonomics? A serum metabonomic study of kidney cancer.

Lin L, Yu Q, Yan X, Hang W, Zheng J, Xing J, Huang B.

Analyst. 2010 Nov;135(11):2970-8. doi: 10.1039/c0an00265h. Epub 2010 Sep 21.

PMID:
20856980
3.

Magnetic resonance metabolomics of intact tissue: a biotechnological tool in cancer diagnostics and treatment evaluation.

Bathen TF, Sitter B, Sjøbakk TE, Tessem MB, Gribbestad IS.

Cancer Res. 2010 Sep 1;70(17):6692-6. doi: 10.1158/0008-5472.CAN-10-0437. Epub 2010 Aug 10. Review.

4.

MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data.

Pluskal T, Castillo S, Villar-Briones A, Oresic M.

BMC Bioinformatics. 2010 Jul 23;11:395. doi: 10.1186/1471-2105-11-395.

5.

Comprehensive analytical strategy for biomarker identification based on liquid chromatography coupled to mass spectrometry and new candidate confirmation tools.

Mohamed R, Varesio E, Ivosev G, Burton L, Bonner R, Hopfgartner G.

Anal Chem. 2009 Sep 15;81(18):7677-94. doi: 10.1021/ac901087t.

PMID:
19702294
6.

Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'.

Draper J, Enot DP, Parker D, Beckmann M, Snowdon S, Lin W, Zubair H.

BMC Bioinformatics. 2009 Jul 21;10:227. doi: 10.1186/1471-2105-10-227.

7.

Development of a metabonomic approach based on LC-ESI-HRMS measurements for profiling of metabolic changes induced by recombinant equine growth hormone in horse urine.

Kieken F, Pinel G, Antignac JP, Monteau F, Christelle Paris A, Popot MA, Bonnaire Y, Le Bizec B.

Anal Bioanal Chem. 2009 Aug;394(8):2119-28. doi: 10.1007/s00216-009-2912-8. Epub 2009 Jul 8.

PMID:
19585110
8.

Highly sensitive feature detection for high resolution LC/MS.

Tautenhahn R, Böttcher C, Neumann S.

BMC Bioinformatics. 2008 Nov 28;9:504. doi: 10.1186/1471-2105-9-504.

9.

Integrated GC-MS and LC-MS plasma metabonomics analysis of ankylosing spondylitis.

Gao P, Lu C, Zhang F, Sang P, Yang D, Li X, Kong H, Yin P, Tian J, Lu X, Lu A, Xu G.

Analyst. 2008 Sep;133(9):1214-20. doi: 10.1039/b807369d. Epub 2008 Jul 28.

PMID:
18709197
10.

XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization.

Benton HP, Wong DM, Trauger SA, Siuzdak G.

Anal Chem. 2008 Aug 15;80(16):6382-9. doi: 10.1021/ac800795f. Epub 2008 Jul 16.

11.

Recent applications of NMR spectroscopy in plant metabolomics.

Ward JL, Baker JM, Beale MH.

FEBS J. 2007 Mar;274(5):1126-31. Review.

12.

Data pre-processing in liquid chromatography-mass spectrometry-based proteomics.

Zhang X, Asara JM, Adamec J, Ouzzani M, Elmagarmid AK.

Bioinformatics. 2005 Nov 1;21(21):4054-9. Epub 2005 Sep 8.

PMID:
16150809
13.

Detecting differential gene expression with a semiparametric hierarchical mixture method.

Newton MA, Noueiry A, Sarkar D, Ahlquist P.

Biostatistics. 2004 Apr;5(2):155-76.

PMID:
15054023
14.

Measurement of TG synthesis and turnover in vivo by 2H2O incorporation into the glycerol moiety and application of MIDA.

Turner SM, Murphy EJ, Neese RA, Antelo F, Thomas T, Agarwal A, Go C, Hellerstein MK.

Am J Physiol Endocrinol Metab. 2003 Oct;285(4):E790-803. Epub 2003 Jun 24.

15.

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Bolstad BM, Irizarry RA, Astrand M, Speed TP.

Bioinformatics. 2003 Jan 22;19(2):185-93.

PMID:
12538238
16.

Missing value estimation methods for DNA microarrays.

Troyanskaya O, Cantor M, Sherlock G, Brown P, Hastie T, Tibshirani R, Botstein D, Altman RB.

Bioinformatics. 2001 Jun;17(6):520-5.

PMID:
11395428
17.

Rapid method to estimate the presence of secondary metabolites in microbial extracts.

Higgs RE, Zahn JA, Gygi JD, Hilton MD.

Appl Environ Microbiol. 2001 Jan;67(1):371-6.

18.

Cluster analysis and display of genome-wide expression patterns.

Eisen MB, Spellman PT, Brown PO, Botstein D.

Proc Natl Acad Sci U S A. 1998 Dec 8;95(25):14863-8.

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