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Items: 9

1.

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy.

Letunic I, Bork P.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W475-8. doi: 10.1093/nar/gkr201. Epub 2011 Apr 5.

2.

Search and clustering orders of magnitude faster than BLAST.

Edgar RC.

Bioinformatics. 2010 Oct 1;26(19):2460-1. doi: 10.1093/bioinformatics/btq461. Epub 2010 Aug 12.

PMID:
20709691
3.

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R.

Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. No abstract available.

4.

Forensic identification using skin bacterial communities.

Fierer N, Lauber CL, Zhou N, McDonald D, Costello EK, Knight R.

Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6477-81. doi: 10.1073/pnas.1000162107. Epub 2010 Mar 15.

5.

A renaissance for the pioneering 16S rRNA gene.

Tringe SG, Hugenholtz P.

Curr Opin Microbiol. 2008 Oct;11(5):442-6. doi: 10.1016/j.mib.2008.09.011. Epub 2008 Oct 8. Review.

PMID:
18817891
6.

Dendroscope: An interactive viewer for large phylogenetic trees.

Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R.

BMC Bioinformatics. 2007 Nov 22;8:460.

7.

PyCogent: a toolkit for making sense from sequence.

Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA.

Genome Biol. 2007;8(8):R171.

8.

ARB: a software environment for sequence data.

Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, Buchner A, Lai T, Steppi S, Jobb G, Förster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, König A, Liss T, Lüssmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH.

Nucleic Acids Res. 2004 Feb 25;32(4):1363-71. Print 2004.

9.

A molecular view of microbial diversity and the biosphere.

Pace NR.

Science. 1997 May 2;276(5313):734-40. Review.

PMID:
9115194

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