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Items: 13

1.

The early whole-blood transcriptional signature of dengue virus and features associated with progression to dengue shock syndrome in Vietnamese children and young adults.

Hoang LT, Lynn DJ, Henn M, Birren BW, Lennon NJ, Le PT, Duong KT, Nguyen TT, Mai LN, Farrar JJ, Hibberd ML, Simmons CP.

J Virol. 2010 Dec;84(24):12982-94. doi: 10.1128/JVI.01224-10. Epub 2010 Oct 13.

2.

Diagnostic classification of schizophrenia by neural network analysis of blood-based gene expression signatures.

Takahashi M, Hayashi H, Watanabe Y, Sawamura K, Fukui N, Watanabe J, Kitajima T, Yamanouchi Y, Iwata N, Mizukami K, Hori T, Shimoda K, Ujike H, Ozaki N, Iijima K, Takemura K, Aoshima H, Someya T.

Schizophr Res. 2010 Jun;119(1-3):210-8. doi: 10.1016/j.schres.2009.12.024. Epub 2010 Jan 18.

PMID:
20083392
3.

Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.

April C, Klotzle B, Royce T, Wickham-Garcia E, Boyaniwsky T, Izzo J, Cox D, Jones W, Rubio R, Holton K, Matulonis U, Quackenbush J, Fan JB.

PLoS One. 2009 Dec 3;4(12):e8162. doi: 10.1371/journal.pone.0008162.

4.

Whole blood genomic biomarkers of acute cardiac allograft rejection.

Lin D, Hollander Z, Ng RT, Imai C, Ignaszewski A, Balshaw R, Freue GC, Wilson-McManus JE, Qasimi P, Meredith A, Mui A, Triche T, McMaster R, Keown PA, McManus BM; Biomarkers in Transplantation Team; NCE CECR Centre of Excellence for the Prevention of Organ Failure.

J Heart Lung Transplant. 2009 Sep;28(9):927-35. doi: 10.1016/j.healun.2009.04.025.

PMID:
19716046
5.

A practical platform for blood biomarker study by using global gene expression profiling of peripheral whole blood.

Tian Z, Palmer N, Schmid P, Yao H, Galdzicki M, Berger B, Wu E, Kohane IS.

PLoS One. 2009;4(4):e5157. doi: 10.1371/journal.pone.0005157. Epub 2009 Apr 17.

6.

Gene expression profiling of whole blood: comparison of target preparation methods for accurate and reproducible microarray analysis.

Vartanian K, Slottke R, Johnstone T, Casale A, Planck SR, Choi D, Smith JR, Rosenbaum JT, Harrington CA.

BMC Genomics. 2009 Jan 5;10:2. doi: 10.1186/1471-2164-10-2.

7.

lumi: a pipeline for processing Illumina microarray.

Du P, Kibbe WA, Lin SM.

Bioinformatics. 2008 Jul 1;24(13):1547-8. doi: 10.1093/bioinformatics/btn224. Epub 2008 May 8.

PMID:
18467348
8.

Characterization of globin RNA interference in gene expression profiling of whole-blood samples.

Wright C, Bergstrom D, Dai H, Marton M, Morris M, Tokiwa G, Wang Y, Fare T.

Clin Chem. 2008 Feb;54(2):396-405. Epub 2007 Dec 18.

9.

Effects of globin mRNA reduction methods on gene expression profiles from whole blood.

Liu J, Walter E, Stenger D, Thach D.

J Mol Diagn. 2006 Nov;8(5):551-8.

10.
11.

Bioconductor: open software development for computational biology and bioinformatics.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J.

Genome Biol. 2004;5(10):R80. Epub 2004 Sep 15.

12.

A versatile assay for high-throughput gene expression profiling on universal array matrices.

Fan JB, Yeakley JM, Bibikova M, Chudin E, Wickham E, Chen J, Doucet D, Rigault P, Zhang B, Shen R, McBride C, Li HR, Fu XD, Oliphant A, Barker DL, Chee MS.

Genome Res. 2004 May;14(5):878-85.

13.

Surrogate tissue analysis: monitoring toxicant exposure and health status of inaccessible tissues through the analysis of accessible tissues and cells.

Rockett JC, Burczynski ME, Fornace AJ, Herrmann PC, Krawetz SA, Dix DJ.

Toxicol Appl Pharmacol. 2004 Jan 15;194(2):189-99. Review.

PMID:
14736499

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