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Variant G57E of mannose binding lectin associated with protection against tuberculosis caused by Mycobacterium africanum but not by M. tuberculosis.

Thye T, Niemann S, Walter K, Homolka S, Intemann CD, Chinbuah MA, Enimil A, Gyapong J, Osei I, Owusu-Dabo E, Rüsch-Gerdes S, Horstmann RD, Ehlers S, Meyer CG.

PLoS One. 2011;6(6):e20908. doi: 10.1371/journal.pone.0020908.


Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages.

Portevin D, Gagneux S, Comas I, Young D.

PLoS Pathog. 2011 Mar;7(3):e1001307. doi: 10.1371/journal.ppat.1001307.


Population biological principles of drug-resistance evolution in infectious diseases.

zur Wiesch PA, Kouyos R, Engelstädter J, Regoes RR, Bonhoeffer S.

Lancet Infect Dis. 2011 Mar;11(3):236-47. doi: 10.1016/S1473-3099(10)70264-4. Review.


Genotyping of Mycobacterium tuberculosis: application in epidemiologic studies.

Kato-Maeda M, Metcalfe JZ, Flores L.

Future Microbiol. 2011 Feb;6(2):203-16. doi: 10.2217/fmb.10.165. Review.


Mycobacterium tuberculosis and the intimate discourse of a chronic infection.

Russell DG.

Immunol Rev. 2011 Mar;240(1):252-68. doi: 10.1111/j.1600-065X.2010.00984.x. Review.


Whole-genome sequencing and social-network analysis of a tuberculosis outbreak.

Gardy JL, Johnston JC, Ho Sui SJ, Cook VJ, Shah L, Brodkin E, Rempel S, Moore R, Zhao Y, Holt R, Varhol R, Birol I, Lem M, Sharma MK, Elwood K, Jones SJ, Brinkman FS, Brunham RC, Tang P.

N Engl J Med. 2011 Feb 24;364(8):730-9. doi: 10.1056/NEJMoa1003176. Erratum in: N Engl J Med. 2011 Jun 2;364(22):2174.


A systems biology approach to infectious disease research: innovating the pathogen-host research paradigm.

Aderem A, Adkins JN, Ansong C, Galagan J, Kaiser S, Korth MJ, Law GL, McDermott JG, Proll SC, Rosenberger C, Schoolnik G, Katze MG.

MBio. 2011 Mar 1;2(1):e00325-10. doi: 10.1128/mBio.00325-10.


Rapid pneumococcal evolution in response to clinical interventions.

Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, van der Linden M, McGee L, von Gottberg A, Song JH, Ko KS, Pichon B, Baker S, Parry CM, Lambertsen LM, Shahinas D, Pillai DR, Mitchell TJ, Dougan G, Tomasz A, Klugman KP, Parkhill J, Hanage WP, Bentley SD.

Science. 2011 Jan 28;331(6016):430-4. doi: 10.1126/science.1198545.


CD4 T cells promote rather than control tuberculosis in the absence of PD-1-mediated inhibition.

Barber DL, Mayer-Barber KD, Feng CG, Sharpe AH, Sher A.

J Immunol. 2011 Feb 1;186(3):1598-607. doi: 10.4049/jimmunol.1003304.


Does M. tuberculosis genomic diversity explain disease diversity?

Coscolla M, Gagneux S.

Drug Discov Today Dis Mech. 2010 Spring;7(1):e43-e59.


Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations.

Gonzalez-Galarza FF, Christmas S, Middleton D, Jones AR.

Nucleic Acids Res. 2011 Jan;39(Database issue):D913-9. doi: 10.1093/nar/gkq1128.


Metabolomics of Mycobacterium tuberculosis reveals compartmentalized co-catabolism of carbon substrates.

de Carvalho LP, Fischer SM, Marrero J, Nathan C, Ehrt S, Rhee KY.

Chem Biol. 2010 Oct 29;17(10):1122-31. doi: 10.1016/j.chembiol.2010.08.009.


Mycobacterium africanum--review of an important cause of human tuberculosis in West Africa.

de Jong BC, Antonio M, Gagneux S.

PLoS Negl Trop Dis. 2010 Sep 28;4(9):e744. doi: 10.1371/journal.pntd.0000744. Review.


Ancient urbanization predicts genetic resistance to tuberculosis.

Barnes I, Duda A, Pybus OG, Thomas MG.

Evolution. 2011 Mar;65(3):842-8. doi: 10.1111/j.1558-5646.2010.01132.x.


Rapid molecular detection of tuberculosis and rifampin resistance.

Boehme CC, Nabeta P, Hillemann D, Nicol MP, Shenai S, Krapp F, Allen J, Tahirli R, Blakemore R, Rustomjee R, Milovic A, Jones M, O'Brien SM, Persing DH, Ruesch-Gerdes S, Gotuzzo E, Rodrigues C, Alland D, Perkins MD.

N Engl J Med. 2010 Sep 9;363(11):1005-15. doi: 10.1056/NEJMoa0907847.


An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis.

Berry MP, Graham CM, McNab FW, Xu Z, Bloch SA, Oni T, Wilkinson KA, Banchereau R, Skinner J, Wilkinson RJ, Quinn C, Blankenship D, Dhawan R, Cush JJ, Mejias A, Ramilo O, Kon OM, Pascual V, Banchereau J, Chaussabel D, O'Garra A.

Nature. 2010 Aug 19;466(7309):973-7. doi: 10.1038/nature09247.


Dynamic antibody responses to the Mycobacterium tuberculosis proteome.

Kunnath-Velayudhan S, Salamon H, Wang HY, Davidow AL, Molina DM, Huynh VT, Cirillo DM, Michel G, Talbot EA, Perkins MD, Felgner PL, Liang X, Gennaro ML.

Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14703-8. doi: 10.1073/pnas.1009080107.


High-resolution typing by integration of genome sequencing data in a large tuberculosis cluster.

Schürch AC, Kremer K, Daviena O, Kiers A, Boeree MJ, Siezen RJ, van Soolingen D.

J Clin Microbiol. 2010 Sep;48(9):3403-6. doi: 10.1128/JCM.00370-10.


Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved.

Comas I, Chakravartti J, Small PM, Galagan J, Niemann S, Kremer K, Ernst JD, Gagneux S.

Nat Genet. 2010 Jun;42(6):498-503. doi: 10.1038/ng.590.


Multidrug-resistant and extensively drug-resistant tuberculosis: a threat to global control of tuberculosis.

Gandhi NR, Nunn P, Dheda K, Schaaf HS, Zignol M, van Soolingen D, Jensen P, Bayona J.

Lancet. 2010 May 22;375(9728):1830-43. doi: 10.1016/S0140-6736(10)60410-2.

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