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Items: 1 to 20 of 70

1.

Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments.

McCormick KP, Willmann MR, Meyers BC.

Silence. 2011 Feb 28;2(1):2. doi: 10.1186/1758-907X-2-2.

2.

Discovery of novel human breast cancer microRNAs from deep sequencing data by analysis of pri-microRNA secondary structures.

Ryu S, Joshi N, McDonnell K, Woo J, Choi H, Gao D, McCombie WR, Mittal V.

PLoS One. 2011 Feb 8;6(2):e16403. doi: 10.1371/journal.pone.0016403.

3.

MicroRNA-100 regulates neovascularization by suppression of mammalian target of rapamycin in endothelial and vascular smooth muscle cells.

Grundmann S, Hans FP, Kinniry S, Heinke J, Helbing T, Bluhm F, Sluijter JP, Hoefer I, Pasterkamp G, Bode C, Moser M.

Circulation. 2011 Mar 8;123(9):999-1009. doi: 10.1161/CIRCULATIONAHA.110.000323. Epub 2011 Feb 21.

4.

Coexpression of an intronic microRNA and its host gene reveals a potential role for miR-483-5p as an IGF2 partner.

Ma N, Wang X, Qiao Y, Li F, Hui Y, Zou C, Jin J, Lv G, Peng Y, Wang L, Huang H, Zhou L, Zheng X, Gao X.

Mol Cell Endocrinol. 2011 Feb 10;333(1):96-101. doi: 10.1016/j.mce.2010.11.027. Epub 2010 Dec 10.

PMID:
21146586
5.

Intronic miR-211 assumes the tumor suppressive function of its host gene in melanoma.

Levy C, Khaled M, Iliopoulos D, Janas MM, Schubert S, Pinner S, Chen PH, Li S, Fletcher AL, Yokoyama S, Scott KL, Garraway LA, Song JS, Granter SR, Turley SJ, Fisher DE, Novina CD.

Mol Cell. 2010 Dec 10;40(5):841-9. doi: 10.1016/j.molcel.2010.11.020. Epub 2010 Nov 25.

6.

High levels of microRNA-21 in the stroma of colorectal cancers predict short disease-free survival in stage II colon cancer patients.

Nielsen BS, Jørgensen S, Fog JU, Søkilde R, Christensen IJ, Hansen U, Brünner N, Baker A, Møller S, Nielsen HJ.

Clin Exp Metastasis. 2011 Jan;28(1):27-38. doi: 10.1007/s10585-010-9355-7. Epub 2010 Oct 31.

7.

miRBase: integrating microRNA annotation and deep-sequencing data.

Kozomara A, Griffiths-Jones S.

Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7. doi: 10.1093/nar/gkq1027. Epub 2010 Oct 30.

8.

Next-generation sequencing identifies the natural killer cell microRNA transcriptome.

Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER.

Genome Res. 2010 Nov;20(11):1590-604. doi: 10.1101/gr.107995.110. Epub 2010 Oct 8.

9.

Computational identification and characterization of primate-specific microRNAs in human genome.

Lin S, Cheung WK, Chen S, Lu G, Wang Z, Xie D, Li K, Lin MC, Kung HF.

Comput Biol Chem. 2010 Aug;34(4):232-41. doi: 10.1016/j.compbiolchem.2010.08.001. Epub 2010 Aug 24.

PMID:
20863765
10.

Mammalian microRNAs predominantly act to decrease target mRNA levels.

Guo H, Ingolia NT, Weissman JS, Bartel DP.

Nature. 2010 Aug 12;466(7308):835-40. doi: 10.1038/nature09267.

11.

Psoriasis genetics: breaking the barrier.

Roberson ED, Bowcock AM.

Trends Genet. 2010 Sep;26(9):415-23. doi: 10.1016/j.tig.2010.06.006. Epub 2010 Aug 6. Review.

12.

A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing.

Martí E, Pantano L, Bañez-Coronel M, Llorens F, Miñones-Moyano E, Porta S, Sumoy L, Ferrer I, Estivill X.

Nucleic Acids Res. 2010 Nov;38(20):7219-35. doi: 10.1093/nar/gkq575. Epub 2010 Jun 30.

13.

MicroRNA-33 and the SREBP host genes cooperate to control cholesterol homeostasis.

Najafi-Shoushtari SH, Kristo F, Li Y, Shioda T, Cohen DE, Gerszten RE, Näär AM.

Science. 2010 Jun 18;328(5985):1566-9. doi: 10.1126/science.1189123. Epub 2010 May 13.

14.
15.

MicroRNAs and potential target interactions in psoriasis.

Zibert JR, Løvendorf MB, Litman T, Olsen J, Kaczkowski B, Skov L.

J Dermatol Sci. 2010 Jun;58(3):177-85. doi: 10.1016/j.jdermsci.2010.03.004. Epub 2010 Mar 17.

PMID:
20417062
16.

Characterization of the Melanoma miRNAome by Deep Sequencing.

Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK.

PLoS One. 2010 Mar 12;5(3):e9685. doi: 10.1371/journal.pone.0009685.

17.

Discovery of novel microRNAs in female reproductive tract using next generation sequencing.

Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH.

PLoS One. 2010 Mar 10;5(3):e9637. doi: 10.1371/journal.pone.0009637.

18.

Assessment of the psoriatic transcriptome in a large sample: additional regulated genes and comparisons with in vitro models.

Gudjonsson JE, Ding J, Johnston A, Tejasvi T, Guzman AM, Nair RP, Voorhees JJ, Abecasis GR, Elder JT.

J Invest Dermatol. 2010 Jul;130(7):1829-40. doi: 10.1038/jid.2010.36. Epub 2010 Mar 11.

19.

AngiomiRs--key regulators of angiogenesis.

Wang S, Olson EN.

Curr Opin Genet Dev. 2009 Jun;19(3):205-11. doi: 10.1016/j.gde.2009.04.002. Epub 2009 May 14. Review.

20.

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Langmead B, Trapnell C, Pop M, Salzberg SL.

Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4.

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