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Identification of a role for histone H2B ubiquitylation in noncoding RNA 3'-end formation through mutational analysis of Rtf1 in Saccharomyces cerevisiae.

Tomson BN, Davis CP, Warner MH, Arndt KM.

Genetics. 2011 Jun;188(2):273-89. doi: 10.1534/genetics.111.128645. Epub 2011 Mar 24.


Nascent transcript sequencing visualizes transcription at nucleotide resolution.

Churchman LS, Weissman JS.

Nature. 2011 Jan 20;469(7330):368-73. doi: 10.1038/nature09652.


CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1.

Bartkowiak B, Liu P, Phatnani HP, Fuda NJ, Cooper JJ, Price DH, Adelman K, Lis JT, Greenleaf AL.

Genes Dev. 2010 Oct 15;24(20):2303-16. doi: 10.1101/gad.1968210.


The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II.

Jimeno-González S, Haaning LL, Malagon F, Jensen TH.

Mol Cell. 2010 Feb 26;37(4):580-7. doi: 10.1016/j.molcel.2010.01.019.


Progression through the RNA polymerase II CTD cycle.

Buratowski S.

Mol Cell. 2009 Nov 25;36(4):541-6. doi: 10.1016/j.molcel.2009.10.019. Review.


Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast.

Bumgarner SL, Dowell RD, Grisafi P, Gifford DK, Fink GR.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18321-6. doi: 10.1073/pnas.0909641106. Epub 2009 Sep 30.


Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes.

Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, Zhao K.

Cell. 2009 Sep 4;138(5):1019-31. doi: 10.1016/j.cell.2009.06.049. Epub 2009 Aug 20.


Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions.

Kim T, Buratowski S.

Cell. 2009 Apr 17;137(2):259-72. doi: 10.1016/j.cell.2009.02.045.


Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters.

Qiu H, Hu C, Hinnebusch AG.

Mol Cell. 2009 Mar 27;33(6):752-62. doi: 10.1016/j.molcel.2009.02.018.


Molecular biology: The long and short of RNAs.

Carninci P.

Nature. 2009 Feb 19;457(7232):974-5. doi: 10.1038/457974b. No abstract available.


Widespread bidirectional promoters are the major source of cryptic transcripts in yeast.

Neil H, Malabat C, d'Aubenton-Carafa Y, Xu Z, Steinmetz LM, Jacquier A.

Nature. 2009 Feb 19;457(7232):1038-42. doi: 10.1038/nature07747. Epub 2009 Jan 25.


The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain.

Vasiljeva L, Kim M, Mutschler H, Buratowski S, Meinhart A.

Nat Struct Mol Biol. 2008 Aug;15(8):795-804. doi: 10.1038/nsmb.1468. Epub 2008 Jul 27.


Poised RNA polymerase II gives pause for thought.

Margaritis T, Holstege FC.

Cell. 2008 May 16;133(4):581-4. doi: 10.1016/j.cell.2008.04.027. Review.


Transcription termination and RNA degradation contribute to silencing of RNA polymerase II transcription within heterochromatin.

Vasiljeva L, Kim M, Terzi N, Soares LM, Buratowski S.

Mol Cell. 2008 Feb 15;29(3):313-23. doi: 10.1016/j.molcel.2008.01.011.


Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS.

Lee JS, Shukla A, Schneider J, Swanson SK, Washburn MP, Florens L, Bhaumik SR, Shilatifard A.

Cell. 2007 Dec 14;131(6):1084-96.


Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z.

Venkatasubrahmanyam S, Hwang WW, Meneghini MD, Tong AH, Madhani HD.

Proc Natl Acad Sci U S A. 2007 Oct 16;104(42):16609-14. Epub 2007 Oct 9.


Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription.

Li B, Gogol M, Carey M, Pattenden SG, Seidel C, Workman JL.

Genes Dev. 2007 Jun 1;21(11):1422-30.


Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map.

Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, Andrews B, Boone C, Berger SL, Hieter P, Zhang Z, Brown GW, Ingles CJ, Emili A, Allis CD, Toczyski DP, Weissman JS, Greenblatt JF, Krogan NJ.

Nature. 2007 Apr 12;446(7137):806-10. Epub 2007 Feb 21.


Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes.

Sharma VM, Tomar RS, Dempsey AE, Reese JC.

Mol Cell Biol. 2007 Apr;27(8):3199-210. Epub 2007 Feb 12. Erratum in: Mol Cell Biol. 2008 Feb;28(4):1427.

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