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Items: 1 to 20 of 30

1.

Development of a low bias method for characterizing viral populations using next generation sequencing technology.

Willerth SM, Pedro HA, Pachter L, Humeau LM, Arkin AP, Schaffer DV.

PLoS One. 2010 Oct 22;5(10):e13564. doi: 10.1371/journal.pone.0013564.

2.

Comparison of methods to detect HIV dual infection.

Pacold M, Smith D, Little S, Cheng PM, Jordan P, Ignacio C, Richman D, Pond SK.

AIDS Res Hum Retroviruses. 2010 Dec;26(12):1291-8. doi: 10.1089/aid.2010.0042. Epub 2010 Oct 18.

3.

Changes in the distribution of HIV type 1 subtypes D and A in Rakai District, Uganda between 1994 and 2002.

Conroy SA, Laeyendecker O, Redd AD, Collinson-Streng A, Kong X, Makumbi F, Lutalo T, Sewankambo N, Kiwanuka N, Gray RH, Wawer MJ, Serwadda D, Quinn TC; Rakai Health Sciences Program.

AIDS Res Hum Retroviruses. 2010 Oct;26(10):1087-91. doi: 10.1089/aid.2010.0054. Epub 2010 Oct 6.

4.

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies.

Zagordi O, Klein R, Däumer M, Beerenwinkel N.

Nucleic Acids Res. 2010 Nov;38(21):7400-9. doi: 10.1093/nar/gkq655. Epub 2010 Jul 29.

5.

Analysis of infectious virus clones from two HIV-1 superinfection cases suggests that the primary strains have lower fitness.

van der Kuyl AC, Kozaczynska K, Ariën KK, Gali Y, Balázs VR, Dekker SJ, Zorgdrager F, Vanham G, Berkhout B, Cornelissen M.

Retrovirology. 2010 Jul 20;7:60. doi: 10.1186/1742-4690-7-60.

6.

Disease progression due to dual infection in an HLA-B57-positive asymptomatic long-term nonprogressor infected with a nef-defective HIV-1 strain.

Braibant M, Xie J, Samri A, Agut H, Autran B, Barin F.

Virology. 2010 Sep 15;405(1):81-92. doi: 10.1016/j.virol.2010.05.026. Epub 2010 Jun 19.

7.

Absence of HIV-1 superinfection 1 year after infection between 1985 and 1997 coincides with a reduction in sexual risk behavior in the seroincident Amsterdam cohort of homosexual men.

Rachinger A, Stolte IG, van de Ven TD, Burger JA, Prins M, Schuitemaker H, van 't Wout AB.

Clin Infect Dis. 2010 May 1;50(9):1309-15. doi: 10.1086/651687.

PMID:
20367230
8.

Evaluation of pre-screening methods for the identification of HIV-1 superinfection.

Rachinger A, van de Ven TD, Burger JA, Schuitemaker H, van 't Wout AB.

J Virol Methods. 2010 May;165(2):311-7. doi: 10.1016/j.jviromet.2010.02.016. Epub 2010 Feb 21.

PMID:
20178816
9.

HIV-1 subtypes and differences in heterosexual HIV transmission among HIV-discordant couples in Rakai, Uganda.

Kiwanuka N, Laeyendecker O, Quinn TC, Wawer MJ, Shepherd J, Robb M, Kigozi G, Kagaayi J, Serwadda D, Makumbi FE, Reynolds SJ, Gray RH.

AIDS. 2009 Nov 27;23(18):2479-84. doi: 10.1097/QAD.0b013e328330cc08.

10.

Geographic HIV type 1 subtype distribution in Rakai district, Uganda.

Collinson-Streng AN, Redd AD, Sewankambo NK, Serwadda D, Rezapour M, Lamers SL, Gray RH, Wawer MJ, Quinn TC, Laeyendecker O.

AIDS Res Hum Retroviruses. 2009 Oct;25(10):1045-8. doi: 10.1089/aid.2009.0127.

11.

HIV-1 superinfection in an HIV-2-infected woman with subsequent control of HIV-1 plasma viremia.

Günthard HF, Huber M, Kuster H, Shah C, Schüpbach J, Trkola A, Böni J.

Clin Infect Dis. 2009 Jun 1;48(11):e117-20. doi: 10.1086/598987.

PMID:
19382874
12.

Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations.

Rozera G, Abbate I, Bruselles A, Vlassi C, D'Offizi G, Narciso P, Chillemi G, Prosperi M, Ippolito G, Capobianchi MR.

Retrovirology. 2009 Feb 12;6:15. doi: 10.1186/1742-4690-6-15.

13.

Examination of a second region of the HIV type 1 genome reveals additional cases of superinfection.

Piantadosi A, Ngayo MO, Chohan B, Overbaugh J.

AIDS Res Hum Retroviruses. 2008 Sep;24(9):1221. doi: 10.1089/aid.2008.0100.

14.

Immune-driven recombination and loss of control after HIV superinfection.

Streeck H, Li B, Poon AF, Schneidewind A, Gladden AD, Power KA, Daskalakis D, Bazner S, Zuniga R, Brander C, Rosenberg ES, Frost SD, Altfeld M, Allen TM.

J Exp Med. 2008 Aug 4;205(8):1789-96. doi: 10.1084/jem.20080281. Epub 2008 Jul 14.

15.

Chronic HIV-1 infection frequently fails to protect against superinfection.

Piantadosi A, Chohan B, Chohan V, McClelland RS, Overbaugh J.

PLoS Pathog. 2007 Nov;3(11):e177.

16.

Lack of neutralizing antibody response to HIV-1 predisposes to superinfection.

Smith DM, Strain MC, Frost SD, Pillai SK, Wong JK, Wrin T, Liu Y, Petropolous CJ, Daar ES, Little SJ, Richman DD.

Virology. 2006 Nov 10;355(1):1-5. Epub 2006 Sep 7.

17.

Frequency of HIV type 1 dual infection and HIV diversity: analysis of low- and high-risk populations in Mbeya Region, Tanzania.

Herbinger KH, Gerhardt M, Piyasirisilp S, Mloka D, Arroyo MA, Hoffmann O, Maboko L, Birx DL, Mmbando D, McCutchan FE, Hoelscher M.

AIDS Res Hum Retroviruses. 2006 Jul;22(7):599-606.

PMID:
16831083
18.

In-depth analysis of a heterosexually acquired human immunodeficiency virus type 1 superinfection: evolution, temporal fluctuation, and intercompartment dynamics from the seronegative window period through 30 months postinfection.

McCutchan FE, Hoelscher M, Tovanabutra S, Piyasirisilp S, Sanders-Buell E, Ramos G, Jagodzinski L, Polonis V, Maboko L, Mmbando D, Hoffmann O, Riedner G, von Sonnenburg F, Robb M, Birx DL.

J Virol. 2005 Sep;79(18):11693-704.

19.

HIV drug resistance acquired through superinfection.

Smith DM, Wong JK, Hightower GK, Ignacio CC, Koelsch KK, Petropoulos CJ, Richman DD, Little SJ.

AIDS. 2005 Aug 12;19(12):1251-6.

PMID:
16052079
20.

Evidence for frequent reinfection with human immunodeficiency virus type 1 of a different subtype.

Chohan B, Lavreys L, Rainwater SM, Overbaugh J.

J Virol. 2005 Aug;79(16):10701-8.

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