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Items: 1 to 20 of 49

1.

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.

Abascal F, Zardoya R, Telford MJ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W7-13. doi: 10.1093/nar/gkq291. Epub 2010 Apr 30.

2.

Novel hantavirus in the flat-skulled shrew (Sorex roboratus).

Kang HJ, Arai S, Hope AG, Cook JA, Yanagihara R.

Vector Borne Zoonotic Dis. 2010 Aug;10(6):593-7. doi: 10.1089/vbz.2009.0159.

3.

Temporal and geographic evidence for evolution of Sin Nombre virus using molecular analyses of viral RNA from Colorado, New Mexico and Montana.

Black WC 4th, Doty JB, Hughes MT, Beaty BJ, Calisher CH.

Virol J. 2009 Jul 14;6:102. doi: 10.1186/1743-422X-6-102.

4.

Evolutionary insights from a genetically divergent hantavirus harbored by the European common mole (Talpa europaea).

Kang HJ, Bennett SN, Sumibcay L, Arai S, Hope AG, Mocz G, Song JW, Cook JA, Yanagihara R.

PLoS One. 2009 Jul 7;4(7):e6149. doi: 10.1371/journal.pone.0006149.

5.

Host switch during evolution of a genetically distinct hantavirus in the American shrew mole (Neurotrichus gibbsii).

Kang HJ, Bennett SN, Dizney L, Sumibcay L, Arai S, Ruedas LA, Song JW, Yanagihara R.

Virology. 2009 May 25;388(1):8-14. doi: 10.1016/j.virol.2009.03.019. Epub 2009 Apr 23. Erratum in: Virology. 2009 Aug 15;391(1):148.

6.

A proposal for new criteria for the classification of hantaviruses, based on S and M segment protein sequences.

Maes P, Klempa B, Clement J, Matthijnssens J, Gajdusek DC, Krüger DH, Van Ranst M.

Infect Genet Evol. 2009 Sep;9(5):813-20. doi: 10.1016/j.meegid.2009.04.012. Epub 2009 Apr 23.

PMID:
19393771
7.

Characterization of Imjin virus, a newly isolated hantavirus from the Ussuri white-toothed shrew (Crocidura lasiura).

Song JW, Kang HJ, Gu SH, Moon SS, Bennett SN, Song KJ, Baek LJ, Kim HC, O'Guinn ML, Chong ST, Klein TA, Yanagihara R.

J Virol. 2009 Jun;83(12):6184-91. doi: 10.1128/JVI.00371-09. Epub 2009 Apr 8.

8.

Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence.

Ramsden C, Holmes EC, Charleston MA.

Mol Biol Evol. 2009 Jan;26(1):143-53. doi: 10.1093/molbev/msn234. Epub 2008 Oct 14.

PMID:
18922760
9.

Molecular phylogeny of a newfound hantavirus in the Japanese shrew mole (Urotrichus talpoides).

Arai S, Ohdachi SD, Asakawa M, Kang HJ, Mocz G, Arikawa J, Okabe N, Yanagihara R.

Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16296-301. doi: 10.1073/pnas.0808942105. Epub 2008 Oct 14.

10.

A rapid bootstrap algorithm for the RAxML Web servers.

Stamatakis A, Hoover P, Rougemont J.

Syst Biol. 2008 Oct;57(5):758-71. doi: 10.1080/10635150802429642.

PMID:
18853362
11.

High rates of molecular evolution in hantaviruses.

Ramsden C, Melo FL, Figueiredo LM, Holmes EC, Zanotto PM; VGDN Consortium.

Mol Biol Evol. 2008 Jul;25(7):1488-92. doi: 10.1093/molbev/msn093. Epub 2008 Apr 15.

PMID:
18417484
12.

jModelTest: phylogenetic model averaging.

Posada D.

Mol Biol Evol. 2008 Jul;25(7):1253-6. doi: 10.1093/molbev/msn083. Epub 2008 Apr 8.

PMID:
18397919
13.

Phylogenetically distinct hantaviruses in the masked shrew (Sorex cinereus) and dusky shrew (Sorex monticolus) in the United States.

Arai S, Bennett SN, Sumibcay L, Cook JA, Song JW, Hope A, Parmenter C, Nerurkar VR, Yates TL, Yanagihara R.

Am J Trop Med Hyg. 2008 Feb;78(2):348-51.

14.

Hantavirus in northern short-tailed shrew, United States.

Arai S, Song JW, Sumibcay L, Bennett SN, Nerurkar VR, Parmenter C, Cook JA, Yates TL, Yanagihara R.

Emerg Infect Dis. 2007 Sep;13(9):1420-3. doi: 10.3201/eid1309.070484.

15.

Newfound hantavirus in Chinese mole shrew, Vietnam.

Song JW, Kang HJ, Song KJ, Truong TT, Bennett SN, Arai S, Truong NU, Yanagihara R.

Emerg Infect Dis. 2007 Nov;13(11):1784-7. doi: 10.3201/eid1311.070492.

16.

Thottapalayam virus, a prototype shrewborne hantavirus.

Song JW, Baek LJ, Schmaljohn CS, Yanagihara R.

Emerg Infect Dis. 2007 Jul;13(7):980-5. doi: 10.3201/eid1307.070031. Review.

17.

Seewis virus, a genetically distinct hantavirus in the Eurasian common shrew (Sorex araneus).

Song JW, Gu SH, Bennett SN, Arai S, Puorger M, Hilbe M, Yanagihara R.

Virol J. 2007 Oct 30;4:114.

19.

Novel hantavirus sequences in Shrew, Guinea.

Klempa B, Fichet-Calvet E, Lecompte E, Auste B, Aniskin V, Meisel H, Barrière P, Koivogui L, ter Meulen J, Krüger DH.

Emerg Infect Dis. 2007 Mar;13(3):520-2. No abstract available.

20.

Traversing the tangle: algorithms and applications for cophylogenetic studies.

Charleston MA, Perkins SL.

J Biomed Inform. 2006 Feb;39(1):62-71. Epub 2005 Sep 26. Review.

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