Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 40

1.

Cyanine dyes in biophysical research: the photophysics of polymethine fluorescent dyes in biomolecular environments.

Levitus M, Ranjit S.

Q Rev Biophys. 2011 Feb;44(1):123-51. doi: 10.1017/S0033583510000247. Epub 2010 Nov 26. Review.

PMID:
21108866
2.

Molecular mechanisms of retroviral integrase inhibition and the evolution of viral resistance.

Hare S, Vos AM, Clayton RF, Thuring JW, Cummings MD, Cherepanov P.

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):20057-62. doi: 10.1073/pnas.1010246107. Epub 2010 Oct 28.

3.

Signal/noise analysis of FRET-based sensors.

Woehler A, Wlodarczyk J, Neher E.

Biophys J. 2010 Oct 6;99(7):2344-54. doi: 10.1016/j.bpj.2010.07.053.

4.

Structure-based modeling of the functional HIV-1 intasome and its inhibition.

Krishnan L, Li X, Naraharisetty HL, Hare S, Cherepanov P, Engelman A.

Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15910-5. doi: 10.1073/pnas.1002346107. Epub 2010 Aug 23.

5.

Retroviral intasome assembly and inhibition of DNA strand transfer.

Hare S, Gupta SS, Valkov E, Engelman A, Cherepanov P.

Nature. 2010 Mar 11;464(7286):232-6. doi: 10.1038/nature08784. Epub 2010 Jan 31.

6.

Comparison of metal-dependent catalysis by HIV-1 and ASV integrase proteins using a new and rapid, moderate throughput assay for joining activity in solution.

Andrake MD, Ramcharan J, Merkel G, Zhao XZ, Burke TR Jr, Skalka AM.

AIDS Res Ther. 2009 Jun 29;6:14. doi: 10.1186/1742-6405-6-14.

7.

Oligonucleotide-based assays for integrase activity.

Merkel G, Andrake MD, Ramcharan J, Skalka AM.

Methods. 2009 Apr;47(4):243-8. doi: 10.1016/j.ymeth.2008.10.024. Epub 2008 Nov 14. Review.

8.

SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling.

Wang Q, Canutescu AA, Dunbrack RL Jr.

Nat Protoc. 2008;3(12):1832-47. doi: 10.1038/nprot.2008.184.

9.

Integration of rous sarcoma virus DNA: a CA dinucleotide is not required for integration of the U3 end of viral DNA.

Oh J, Chang KW, Hughes SH.

J Virol. 2008 Nov;82(22):11480-3. doi: 10.1128/JVI.01353-08. Epub 2008 Sep 3.

10.

Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids.

Iqbal A, Arslan S, Okumus B, Wilson TJ, Giraud G, Norman DG, Ha T, Lilley DM.

Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11176-81. doi: 10.1073/pnas.0801707105. Epub 2008 Aug 1.

11.

The structure of cyanine 5 terminally attached to double-stranded DNA: implications for FRET studies.

Iqbal A, Wang L, Thompson KC, Lilley DM, Norman DG.

Biochemistry. 2008 Jul 29;47(30):7857-62. doi: 10.1021/bi800773f. Epub 2008 Jul 3.

PMID:
18597488
12.

Rous sarcoma virus (RSV) integration in vivo: a CA dinucleotide is not required in U3, and RSV linear DNA does not autointegrate.

Oh J, Chang KW, Wierzchoslawski R, Alvord WG, Hughes SH.

J Virol. 2008 Jan;82(1):503-12. Epub 2007 Oct 24.

13.

Fluorescence measurements of duplex DNA oligomers under conditions conducive for forming M-DNA (a metal-DNA complex).

Spring BQ, Clegg RM.

J Phys Chem B. 2007 Aug 23;111(33):10040-52. Epub 2007 Aug 1.

PMID:
17665942
14.

Site-specific dynamics of strands in ss- and dsDNA as revealed by time-domain fluorescence of 2-aminopurine.

Ramreddy T, Rao BJ, Krishnamoorthy G.

J Phys Chem B. 2007 May 24;111(20):5757-66. Epub 2007 May 1.

PMID:
17469866
15.

Molecular mechanisms of HIV integration and therapeutic intervention.

Vandegraaff N, Engelman A.

Expert Rev Mol Med. 2007 Feb 26;9(6):1-19. Review.

PMID:
17320002
16.

Crystal structures of oligonucleotides including the integrase processing site of the Moloney murine leukemia virus.

Montaño SP, Coté ML, Roth MJ, Georgiadis MM.

Nucleic Acids Res. 2006;34(19):5353-60. Epub 2006 Sep 26.

17.
18.

Integration requires a specific interaction of the donor DNA terminal 5'-cytosine with glutamine 148 of the HIV-1 integrase flexible loop.

Johnson AA, Santos W, Pais GC, Marchand C, Amin R, Burke TR Jr, Verdine G, Pommier Y.

J Biol Chem. 2006 Jan 6;281(1):461-7. Epub 2005 Oct 27.

19.

Processing of viral DNA ends channels the HIV-1 integration reaction to concerted integration.

Li M, Craigie R.

J Biol Chem. 2005 Aug 12;280(32):29334-9. Epub 2005 Jun 14.

20.

MollDE: a homology modeling framework you can click with.

Canutescu AA, Dunbrack RL Jr.

Bioinformatics. 2005 Jun 15;21(12):2914-6. Epub 2005 Apr 21.

PMID:
15845657

Supplemental Content

Support Center