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Items: 1 to 20 of 38

1.

Pentastatin-1, a collagen IV derived 20-mer peptide, suppresses tumor growth in a small cell lung cancer xenograft model.

Koskimaki JE, Karagiannis ED, Tang BC, Hammers H, Watkins DN, Pili R, Popel AS.

BMC Cancer. 2010 Feb 1;10:29. doi: 10.1186/1471-2407-10-29.

2.
3.

The crosstalk between EGF, IGF, and Insulin cell signaling pathways--computational and experimental analysis.

Zielinski R, Przytycki PF, Zheng J, Zhang D, Przytycka TM, Capala J.

BMC Syst Biol. 2009 Sep 4;3:88. doi: 10.1186/1752-0509-3-88.

4.

Cytoscape: a community-based framework for network modeling.

Killcoyne S, Carter GW, Smith J, Boyle J.

Methods Mol Biol. 2009;563:219-39. doi: 10.1007/978-1-60761-175-2_12.

PMID:
19597788
5.

A peptide derived from type 1 thrombospondin repeat-containing protein WISP-1 inhibits corneal and choroidal neovascularization.

Cano Mdel V, Karagiannis ED, Soliman M, Bakir B, Zhuang W, Popel AS, Gehlbach PL.

Invest Ophthalmol Vis Sci. 2009 Aug;50(8):3840-5. doi: 10.1167/iovs.08-2607. Epub 2009 Mar 11.

PMID:
19279315
6.

Transcriptional profiling reveals a critical role for tyrosine phosphatase VE-PTP in regulation of VEGFR2 activity and endothelial cell morphogenesis.

Mellberg S, Dimberg A, Bahram F, Hayashi M, Rennel E, Ameur A, Westholm JO, Larsson E, Lindahl P, Cross MJ, Claesson-Welsh L.

FASEB J. 2009 May;23(5):1490-502. doi: 10.1096/fj.08-123810. Epub 2009 Jan 9.

PMID:
19136612
7.

The collagen binding domain of gelatinase A modulates degradation of collagen IV by gelatinase B.

Gioia M, Monaco S, Van Den Steen PE, Sbardella D, Grasso G, Marini S, Overall CM, Opdenakker G, Coletta M.

J Mol Biol. 2009 Feb 20;386(2):419-34. doi: 10.1016/j.jmb.2008.12.021. Epub 2008 Dec 14.

PMID:
19109975
8.

Human Protein Reference Database--2009 update.

Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R, Shafreen B, Venugopal A, Balakrishnan L, Marimuthu A, Banerjee S, Somanathan DS, Sebastian A, Rani S, Ray S, Harrys Kishore CJ, Kanth S, Ahmed M, Kashyap MK, Mohmood R, Ramachandra YL, Krishna V, Rahiman BA, Mohan S, Ranganathan P, Ramabadran S, Chaerkady R, Pandey A.

Nucleic Acids Res. 2009 Jan;37(Database issue):D767-72. doi: 10.1093/nar/gkn892. Epub 2008 Nov 6.

9.

Michigan molecular interactions r2: from interacting proteins to pathways.

Tarcea VG, Weymouth T, Ade A, Bookvich A, Gao J, Mahavisno V, Wright Z, Chapman A, Jayapandian M, Ozgür A, Tian Y, Cavalcoli J, Mirel B, Patel J, Radev D, Athey B, States D, Jagadish HV.

Nucleic Acids Res. 2009 Jan;37(Database issue):D642-6. doi: 10.1093/nar/gkn722. Epub 2008 Oct 31.

10.

A systematic methodology for proteome-wide identification of peptides inhibiting the proliferation and migration of endothelial cells.

Karagiannis ED, Popel AS.

Proc Natl Acad Sci U S A. 2008 Sep 16;105(37):13775-80. doi: 10.1073/pnas.0803241105. Epub 2008 Sep 9.

11.

Integrins: the keys to unlocking angiogenesis.

Silva R, D'Amico G, Hodivala-Dilke KM, Reynolds LE.

Arterioscler Thromb Vasc Biol. 2008 Oct;28(10):1703-13. doi: 10.1161/ATVBAHA.108.172015. Epub 2008 Jul 24. Review.

12.

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration.

Bauer S, Grossmann S, Vingron M, Robinson PN.

Bioinformatics. 2008 Jul 15;24(14):1650-1. doi: 10.1093/bioinformatics/btn250. Epub 2008 May 29.

PMID:
18511468
13.

A global pathway crosstalk network.

Li Y, Agarwal P, Rajagopalan D.

Bioinformatics. 2008 Jun 15;24(12):1442-7. doi: 10.1093/bioinformatics/btn200. Epub 2008 Apr 23.

PMID:
18434343
14.

Novel anti-angiogenic peptides derived from ELR-containing CXC chemokines.

Karagiannis ED, Popel AS.

J Cell Biochem. 2008 Jul 1;104(4):1356-63. doi: 10.1002/jcb.21712.

PMID:
18307172
15.

The BioGRID Interaction Database: 2008 update.

Breitkreutz BJ, Stark C, Reguly T, Boucher L, Breitkreutz A, Livstone M, Oughtred R, Lackner DH, Bähler J, Wood V, Dolinski K, Tyers M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D637-40. Epub 2007 Nov 13.

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17.

Anti-angiogenic peptides identified in thrombospondin type I domains.

Karagiannis ED, Popel AS.

Biochem Biophys Res Commun. 2007 Jul 20;359(1):63-9. Epub 2007 May 14.

18.

Angiogenesis: an organizing principle for drug discovery?

Folkman J.

Nat Rev Drug Discov. 2007 Apr;6(4):273-86. Review.

PMID:
17396134
19.

Reactome: a knowledge base of biologic pathways and processes.

Vastrik I, D'Eustachio P, Schmidt E, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, Matthews L, Wu G, Birney E, Stein L.

Genome Biol. 2007;8(3):R39. Erratum in: Genome Biol. 2009 Feb 4;10(2):402. Joshi-Tope, Geeta [removed].

20.

Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together.

Jayapandian M, Chapman A, Tarcea VG, Yu C, Elkiss A, Ianni A, Liu B, Nandi A, Santos C, Andrews P, Athey B, States D, Jagadish HV.

Nucleic Acids Res. 2007 Jan;35(Database issue):D566-71. Epub 2006 Nov 27.

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