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Items: 1 to 20 of 89

1.

The small subunit processome in ribosome biogenesis—progress and prospects.

Phipps KR, Charette J, Baserga SJ.

Wiley Interdiscip Rev RNA. 2011 Jan-Feb;2(1):1-21. doi: 10.1002/wrna.57. Review.

2.

High-quality binary interactome mapping.

Dreze M, Monachello D, Lurin C, Cusick ME, Hill DE, Vidal M, Braun P.

Methods Enzymol. 2010;470:281-315. doi: 10.1016/S0076-6879(10)70012-4. Epub 2010 Mar 1.

PMID:
20946815
3.

The DEAD-box RNA helicase-like Utp25 is an SSU processome component.

Charette JM, Baserga SJ.

RNA. 2010 Nov;16(11):2156-69. doi: 10.1261/rna.2359810. Epub 2010 Sep 30.

4.

Evolutionary analysis reveals low coverage as the major challenge for protein interaction network alignment.

Ali W, Deane CM.

Mol Biosyst. 2010 Nov;6(11):2296-304. doi: 10.1039/c004430j. Epub 2010 Aug 26.

PMID:
20740252
5.

Yeast protein-protein interaction binding sites: prediction from the motif-motif, motif-domain and domain-domain levels.

Pang E, Lin K.

Mol Biosyst. 2010 Nov;6(11):2164-73. doi: 10.1039/c0mb00038h. Epub 2010 Aug 17.

PMID:
20714642
6.

Utp25p, a nucleolar Saccharomyces cerevisiae protein, interacts with U3 snoRNP subunits and affects processing of the 35S pre-rRNA.

Goldfeder MB, Oliveira CC.

FEBS J. 2010 Jul;277(13):2838-52. doi: 10.1111/j.1742-4658.2010.07701.x. Epub 2010 May 27.

7.

Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network.

Boruc J, Van den Daele H, Hollunder J, Rombauts S, Mylle E, Hilson P, Inzé D, De Veylder L, Russinova E.

Plant Cell. 2010 Apr;22(4):1264-80. doi: 10.1105/tpc.109.073635. Epub 2010 Apr 20.

8.

The C-terminus of Utp4, mutated in childhood cirrhosis, is essential for ribosome biogenesis.

Freed EF, Baserga SJ.

Nucleic Acids Res. 2010 Aug;38(14):4798-806. doi: 10.1093/nar/gkq185. Epub 2010 Apr 12.

9.

Building and analyzing protein interactome networks by cross-species comparisons.

Wiles AM, Doderer M, Ruan J, Gu TT, Ravi D, Blackman B, Bishop AJ.

BMC Syst Biol. 2010 Mar 30;4:36. doi: 10.1186/1752-0509-4-36.

10.

Improving the yeast two-hybrid system with permutated fusions proteins: the Varicella Zoster Virus interactome.

Stellberger T, Häuser R, Baiker A, Pothineni VR, Haas J, Uetz P.

Proteome Sci. 2010 Feb 15;8:8. doi: 10.1186/1477-5956-8-8.

11.

Direct interaction between Utp8p and Utp9p contributes to rRNA processing in budding yeast.

Huang YC, Tseng SF, Tsai HJ, Lenzmeier BA, Teng SC.

Biochem Biophys Res Commun. 2010 Mar 5;393(2):297-302. doi: 10.1016/j.bbrc.2010.02.003. Epub 2010 Feb 6.

PMID:
20138832
12.

A manually curated network of the PML nuclear body interactome reveals an important role for PML-NBs in SUMOylation dynamics.

Van Damme E, Laukens K, Dang TH, Van Ostade X.

Int J Biol Sci. 2010 Jan 12;6(1):51-67. Review.

13.

A protein-protein interaction map of trypanosome ~20S editosomes.

Schnaufer A, Wu M, Park YJ, Nakai T, Deng J, Proff R, Hol WG, Stuart KD.

J Biol Chem. 2010 Feb 19;285(8):5282-95. doi: 10.1074/jbc.M109.059378. Epub 2009 Dec 14.

14.

Recurated protein interaction datasets.

Salwinski L, Licata L, Winter A, Thorneycroft D, Khadake J, Ceol A, Aryamontri AC, Oughtred R, Livstone M, Boucher L, Botstein D, Dolinski K, Berardini T, Huala E, Tyers M, Eisenberg D, Cesareni G, Hermjakob H.

Nat Methods. 2009 Dec;6(12):860-1. doi: 10.1038/nmeth1209-860. No abstract available.

PMID:
19935838
15.

The ATPase and helicase activities of Prp43p are stimulated by the G-patch protein Pfa1p during yeast ribosome biogenesis.

Lebaron S, Papin C, Capeyrou R, Chen YL, Froment C, Monsarrat B, Caizergues-Ferrer M, Grigoriev M, Henry Y.

EMBO J. 2009 Dec 16;28(24):3808-19. doi: 10.1038/emboj.2009.335.

16.

The Pfam protein families database.

Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22. doi: 10.1093/nar/gkp985. Epub 2009 Nov 17.

17.

PROSITE, a protein domain database for functional characterization and annotation.

Sigrist CJ, Cerutti L, de Castro E, Langendijk-Genevaux PS, Bulliard V, Bairoch A, Hulo N.

Nucleic Acids Res. 2010 Jan;38(Database issue):D161-6. doi: 10.1093/nar/gkp885. Epub 2009 Oct 25.

18.

The IntAct molecular interaction database in 2010.

Aranda B, Achuthan P, Alam-Faruque Y, Armean I, Bridge A, Derow C, Feuermann M, Ghanbarian AT, Kerrien S, Khadake J, Kerssemakers J, Leroy C, Menden M, Michaut M, Montecchi-Palazzi L, Neuhauser SN, Orchard S, Perreau V, Roechert B, van Eijk K, Hermjakob H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D525-31. doi: 10.1093/nar/gkp878. Epub 2009 Oct 22.

19.

Systems biology: Untangling the protein web.

Blow N.

Nature. 2009 Jul 16;460(7253):415-8. doi: 10.1038/460415a.

PMID:
19606149
20.

Cytoscape: a community-based framework for network modeling.

Killcoyne S, Carter GW, Smith J, Boyle J.

Methods Mol Biol. 2009;563:219-39. doi: 10.1007/978-1-60761-175-2_12.

PMID:
19597788

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