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Items: 1 to 20 of 36

1.

Toward a general approach for RNA-templated hierarchical assembly of split-proteins.

Furman JL, Badran AH, Ajulo O, Porter JR, Stains CI, Segal DJ, Ghosh I.

J Am Chem Soc. 2010 Aug 25;132(33):11692-701. doi: 10.1021/ja104395b.

2.

Translational repression by PUF proteins in vitro.

Chritton JJ, Wickens M.

RNA. 2010 Jun;16(6):1217-25. doi: 10.1261/rna.2070110. Epub 2010 Apr 28.

3.

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T.

Cell. 2010 Apr 2;141(1):129-41. doi: 10.1016/j.cell.2010.03.009.

4.

PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH.

Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. doi: 10.1107/S0907444909052925. Epub 2010 Jan 22.

5.

A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs.

Zhu D, Stumpf CR, Krahn JM, Wickens M, Hall TM.

Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20192-7. doi: 10.1073/pnas.0812079106. Epub 2009 Nov 16.

6.

Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein.

Wang Y, Opperman L, Wickens M, Hall TM.

Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20186-91. doi: 10.1073/pnas.0812076106. Epub 2009 Nov 9.

7.

Engineering splicing factors with designed specificities.

Wang Y, Cheong CG, Hall TM, Wang Z.

Nat Methods. 2009 Nov;6(11):825-30. doi: 10.1038/nmeth.1379. Epub 2009 Oct 4.

8.

Structure and RNA binding of the mouse Pumilio-2 Puf domain.

Jenkins HT, Baker-Wilding R, Edwards TA.

J Struct Biol. 2009 Sep;167(3):271-6. doi: 10.1016/j.jsb.2009.06.007. Epub 2009 Jun 18.

PMID:
19540345
9.

Phaser crystallographic software.

McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ.

J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. Epub 2007 Jul 13.

10.

A single C. elegans PUF protein binds RNA in multiple modes.

Koh YY, Opperman L, Stumpf C, Mandan A, Keles S, Wickens M.

RNA. 2009 Jun;15(6):1090-9. doi: 10.1261/rna.1545309. Epub 2009 Apr 15.

11.

FBF and its dual control of gld-1 expression in the Caenorhabditis elegans germline.

Suh N, Crittenden SL, Goldstrohm A, Hook B, Thompson B, Wickens M, Kimble J.

Genetics. 2009 Apr;181(4):1249-60. doi: 10.1534/genetics.108.099440. Epub 2009 Feb 16.

12.

A 3'UTR pumilio-binding element directs translational activation in olfactory sensory neurons.

Kaye JA, Rose NC, Goldsworthy B, Goga A, L'Etoile ND.

Neuron. 2009 Jan 15;61(1):57-70. doi: 10.1016/j.neuron.2008.11.012.

13.

Live-cell imaging of viral RNA genomes using a Pumilio-based reporter.

Tilsner J, Linnik O, Christensen NM, Bell K, Roberts IM, Lacomme C, Oparka KJ.

Plant J. 2009 Feb;57(4):758-70. doi: 10.1111/j.1365-313X.2008.03720.x. Epub 2008 Nov 17.

14.

Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system.

Galgano A, Forrer M, Jaskiewicz L, Kanitz A, Zavolan M, Gerber AP.

PLoS One. 2008 Sep 8;3(9):e3164. doi: 10.1371/journal.pone.0003164.

15.

A Caenorhabditis elegans PUF protein family with distinct RNA binding specificity.

Stumpf CR, Kimble J, Wickens M.

RNA. 2008 Aug;14(8):1550-7. doi: 10.1261/rna.1095908. Epub 2008 Jun 25.

16.

Ribonomic analysis of human Pum1 reveals cis-trans conservation across species despite evolution of diverse mRNA target sets.

Morris AR, Mukherjee N, Keene JD.

Mol Cell Biol. 2008 Jun;28(12):4093-103. doi: 10.1128/MCB.00155-08. Epub 2008 Apr 14.

17.

Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity.

Gupta YK, Nair DT, Wharton RP, Aggarwal AK.

Structure. 2008 Apr;16(4):549-57. doi: 10.1016/j.str.2008.01.006. Epub 2008 Mar 6.

18.

Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p.

Miller MT, Higgin JJ, Hall TM.

Nat Struct Mol Biol. 2008 Apr;15(4):397-402. doi: 10.1038/nsmb.1390. Epub 2008 Mar 9.

19.

Conserved regulation of MAP kinase expression by PUF RNA-binding proteins.

Lee MH, Hook B, Pan G, Kershner AM, Merritt C, Seydoux G, Thomson JA, Wickens M, Kimble J.

PLoS Genet. 2007 Dec 28;3(12):e233. doi: 10.1371/journal.pgen.0030233.

20.

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.

Davis IW, Leaver-Fay A, Chen VB, Block JN, Kapral GJ, Wang X, Murray LW, Arendall WB 3rd, Snoeyink J, Richardson JS, Richardson DC.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W375-83. Epub 2007 Apr 22.

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