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Items: 1 to 20 of 71

1.

Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.

Lill CM, Roehr JT, McQueen MB, Kavvoura FK, Bagade S, Schjeide BM, Schjeide LM, Meissner E, Zauft U, Allen NC, Liu T, Schilling M, Anderson KJ, Beecham G, Berg D, Biernacka JM, Brice A, DeStefano AL, Do CB, Eriksson N, Factor SA, Farrer MJ, Foroud T, Gasser T, Hamza T, Hardy JA, Heutink P, Hill-Burns EM, Klein C, Latourelle JC, Maraganore DM, Martin ER, Martinez M, Myers RH, Nalls MA, Pankratz N, Payami H, Satake W, Scott WK, Sharma M, Singleton AB, Stefansson K, Toda T, Tung JY, Vance J, Wood NW, Zabetian CP; 23andMe Genetic Epidemiology of Parkinson's Disease Consortium.; International Parkinson's Disease Genomics Consortium.; Parkinson's Disease GWAS Consortium.; Wellcome Trust Case Control Consortium 2)., Young P, Tanzi RE, Khoury MJ, Zipp F, Lehrach H, Ioannidis JP, Bertram L.

PLoS Genet. 2012;8(3):e1002548. doi: 10.1371/journal.pgen.1002548. Epub 2012 Mar 15.

2.

Genome factor and gene pleiotropy hypotheses in protein evolution.

Zeng Y, Gu X.

Biol Direct. 2010 May 24;5:37. doi: 10.1186/1745-6150-5-37.

3.

Hub promiscuity in protein-protein interaction networks.

Patil A, Kinoshita K, Nakamura H.

Int J Mol Sci. 2010 Apr 26;11(4):1930-43. doi: 10.3390/ijms11041930. Review. Erratum in: Int J Mol Sci. 2010;11(8):2791.

4.

The genetic landscape of a cell.

Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pál C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C.

Science. 2010 Jan 22;327(5964):425-31. doi: 10.1126/science.1180823.

5.

KEGG for representation and analysis of molecular networks involving diseases and drugs.

Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D355-60. doi: 10.1093/nar/gkp896. Epub 2009 Oct 30.

6.

Evolution of biomolecular networks: lessons from metabolic and protein interactions.

Yamada T, Bork P.

Nat Rev Mol Cell Biol. 2009 Nov;10(11):791-803. doi: 10.1038/nrm2787. Review.

PMID:
19851337
7.

Influence of protein abundance on high-throughput protein-protein interaction detection.

Ivanic J, Yu X, Wallqvist A, Reifman J.

PLoS One. 2009 Jun 5;4(6):e5815. doi: 10.1371/journal.pone.0005815.

8.

Protein promiscuity and its implications for biotechnology.

Nobeli I, Favia AD, Thornton JM.

Nat Biotechnol. 2009 Feb;27(2):157-67. doi: 10.1038/nbt1519. Review.

PMID:
19204698
9.

High-throughput, quantitative analyses of genetic interactions in E. coli.

Typas A, Nichols RJ, Siegele DA, Shales M, Collins SR, Lim B, Braberg H, Yamamoto N, Takeuchi R, Wanner BL, Mori H, Weissman JS, Krogan NJ, Gross CA.

Nat Methods. 2008 Sep;5(9):781-7.

10.

AutDB: a gene reference resource for autism research.

Basu SN, Kollu R, Banerjee-Basu S.

Nucleic Acids Res. 2009 Jan;37(Database issue):D832-6. doi: 10.1093/nar/gkn835. Epub 2008 Nov 10.

11.

McKusick's Online Mendelian Inheritance in Man (OMIM).

Amberger J, Bocchini CA, Scott AF, Hamosh A.

Nucleic Acids Res. 2009 Jan;37(Database issue):D793-6. doi: 10.1093/nar/gkn665. Epub 2008 Oct 8.

12.

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

Lynn DJ, Winsor GL, Chan C, Richard N, Laird MR, Barsky A, Gardy JL, Roche FM, Chan TH, Shah N, Lo R, Naseer M, Que J, Yau M, Acab M, Tulpan D, Whiteside MD, Chikatamarla A, Mah B, Munzner T, Hokamp K, Hancock RE, Brinkman FS.

Mol Syst Biol. 2008;4:218. doi: 10.1038/msb.2008.55. Epub 2008 Sep 2.

13.

Local coherence in genetic interaction patterns reveals prevalent functional versatility.

Pu S, Ronen K, Vlasblom J, Greenblatt J, Wodak SJ.

Bioinformatics. 2008 Oct 15;24(20):2376-83. doi: 10.1093/bioinformatics/btn440. Epub 2008 Aug 20.

PMID:
18718945
14.

Gene Ontology term overlap as a measure of gene functional similarity.

Mistry M, Pavlidis P.

BMC Bioinformatics. 2008 Aug 4;9:327. doi: 10.1186/1471-2105-9-327.

15.

Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality.

Zotenko E, Mestre J, O'Leary DP, Przytycka TM.

PLoS Comput Biol. 2008 Aug 1;4(8):e1000140. doi: 10.1371/journal.pcbi.1000140.

16.

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function.

Mostafavi S, Ray D, Warde-Farley D, Grouios C, Morris Q.

Genome Biol. 2008;9 Suppl 1:S4. doi: 10.1186/gb-2008-9-s1-s4. Epub 2008 Jun 27.

17.

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP.

Genome Biol. 2008;9 Suppl 1:S2. doi: 10.1186/gb-2008-9-s1-s2. Epub 2008 Jun 27.

18.

Systematic meta-analyses and field synopsis of genetic association studies in schizophrenia: the SzGene database.

Allen NC, Bagade S, McQueen MB, Ioannidis JP, Kavvoura FK, Khoury MJ, Tanzi RE, Bertram L.

Nat Genet. 2008 Jul;40(7):827-34. doi: 10.1038/ng.171.

PMID:
18583979
19.

Searching the MINT database for protein interaction information.

Cesareni G, Chatr-aryamontri A, Licata L, Ceol A.

Curr Protoc Bioinformatics. 2008 Jun;Chapter 8:Unit 8.5. doi: 10.1002/0471250953.bi0805s22. Review.

PMID:
18551417
20.

Pleiotropic scaling of gene effects and the 'cost of complexity'.

Wagner GP, Kenney-Hunt JP, Pavlicev M, Peck JR, Waxman D, Cheverud JM.

Nature. 2008 Mar 27;452(7186):470-2. doi: 10.1038/nature06756.

PMID:
18368117

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