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Comparison of dengue virus type 2-specific small RNAs from RNA interference-competent and -incompetent mosquito cells.

Scott JC, Brackney DE, Campbell CL, Bondu-Hawkins V, Hjelle B, Ebel GD, Olson KE, Blair CD.

PLoS Negl Trop Dis. 2010 Oct 26;4(10):e848. doi: 10.1371/journal.pntd.0000848.


Differential gene expression from midguts of refractory and susceptible lines of the mosquito, Aedes aegypti, infected with Dengue-2 virus.

Barón OL, Ursic-Bedoya RJ, Lowenberger CA, Ocampo CB.

J Insect Sci. 2010;10:41. doi: 10.1673/031.010.4101.


Locally acquired Dengue--Key West, Florida, 2009-2010.

Centers for Disease Control and Prevention (CDC)..

MMWR Morb Mortal Wkly Rep. 2010 May 21;59(19):577-81.


A scaling normalization method for differential expression analysis of RNA-seq data.

Robinson MD, Oshlack A.

Genome Biol. 2010;11(3):R25. doi: 10.1186/gb-2010-11-3-r25.


Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs.

Wu Q, Luo Y, Lu R, Lau N, Lai EC, Li WX, Ding SW.

Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1606-11. doi: 10.1073/pnas.0911353107.


edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Robinson MD, McCarthy DJ, Smyth GK.

Bioinformatics. 2010 Jan 1;26(1):139-40. doi: 10.1093/bioinformatics/btp616.


Present and future arboviral threats.

Weaver SC, Reisen WK.

Antiviral Res. 2010 Feb;85(2):328-45. doi: 10.1016/j.antiviral.2009.10.008. Review.


Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs.

Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JW, Green PJ, Barton GJ, Hutvagner G.

RNA. 2009 Dec;15(12):2147-60. doi: 10.1261/rna.1738409.


Characterization of viral and human RNAs smaller than canonical MicroRNAs.

Li Z, Kim SW, Lin Y, Moore PS, Chang Y, John B.

J Virol. 2009 Dec;83(24):12751-8. doi: 10.1128/JVI.01325-09.


Endo-siRNAs depend on a new isoform of loquacious and target artificially introduced, high-copy sequences.

Hartig JV, Esslinger S, Böttcher R, Saito K, Förstemann K.

EMBO J. 2009 Oct 7;28(19):2932-44. doi: 10.1038/emboj.2009.220.


Processing of Drosophila endo-siRNAs depends on a specific Loquacious isoform.

Zhou R, Czech B, Brennecke J, Sachidanandam R, Wohlschlegel JA, Perrimon N, Hannon GJ.

RNA. 2009 Oct;15(10):1886-95. doi: 10.1261/rna.1611309.


Virus-host coevolution: common patterns of nucleotide motif usage in Flaviviridae and their hosts.

Lobo FP, Mota BE, Pena SD, Azevedo V, Macedo AM, Tauch A, Machado CR, Franco GR.

PLoS One. 2009 Jul 20;4(7):e6282. doi: 10.1371/journal.pone.0006282.


Discovery of insect and human dengue virus host factors.

Sessions OM, Barrows NJ, Souza-Neto JA, Robinson TJ, Hershey CL, Rodgers MA, Ramirez JL, Dimopoulos G, Yang PL, Pearson JL, Garcia-Blanco MA.

Nature. 2009 Apr 23;458(7241):1047-50. doi: 10.1038/nature07967.


Composition and three-dimensional architecture of the dengue virus replication and assembly sites.

Welsch S, Miller S, Romero-Brey I, Merz A, Bleck CK, Walther P, Fuller SD, Antony C, Krijnse-Locker J, Bartenschlager R.

Cell Host Microbe. 2009 Apr 23;5(4):365-75. doi: 10.1016/j.chom.2009.03.007.


Dengue virus type 2 infections of Aedes aegypti are modulated by the mosquito's RNA interference pathway.

Sánchez-Vargas I, Scott JC, Poole-Smith BK, Franz AW, Barbosa-Solomieu V, Wilusz J, Olson KE, Blair CD.

PLoS Pathog. 2009 Feb;5(2):e1000299. doi: 10.1371/journal.ppat.1000299.


BioMart--biological queries made easy.

Smedley D, Haider S, Ballester B, Holland R, London D, Thorisson G, Kasprzyk A.

BMC Genomics. 2009 Jan 14;10:22. doi: 10.1186/1471-2164-10-22.


A human snoRNA with microRNA-like functions.

Ender C, Krek A, Friedländer MR, Beitzinger M, Weinmann L, Chen W, Pfeffer S, Rajewsky N, Meister G.

Mol Cell. 2008 Nov 21;32(4):519-28. doi: 10.1016/j.molcel.2008.10.017.


DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions.

Yu J, Pacifico S, Liu G, Finley RL Jr.

BMC Genomics. 2008 Oct 7;9:461. doi: 10.1186/1471-2164-9-461.


Comparative genomics of small RNA regulatory pathway components in vector mosquitoes.

Campbell CL, Black WC 4th, Hess AM, Foy BD.

BMC Genomics. 2008 Sep 18;9:425. doi: 10.1186/1471-2164-9-425.

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