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Items: 1 to 20 of 53


Shadow enhancers foster robustness of Drosophila gastrulation.

Perry MW, Boettiger AN, Bothma JP, Levine M.

Curr Biol. 2010 Sep 14;20(17):1562-7. doi: 10.1016/j.cub.2010.07.043.


Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.

Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L.

Nat Biotechnol. 2010 May;28(5):511-5. doi: 10.1038/nbt.1621. Epub 2010 May 2.


Expression in aneuploid Drosophila S2 cells.

Zhang Y, Malone JH, Powell SK, Periwal V, Spana E, Macalpine DM, Oliver B.

PLoS Biol. 2010 Feb 23;8(2):e1000320. doi: 10.1371/journal.pbio.1000320.


An evolutionary consequence of dosage compensation on Drosophila melanogaster female X-chromatin structure?

Zhang Y, Oliver B.

BMC Genomics. 2010 Jan 5;11:6. doi: 10.1186/1471-2164-11-6.


Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation.

Gelbart ME, Larschan E, Peng S, Park PJ, Kuroda MI.

Nat Struct Mol Biol. 2009 Aug;16(8):825-32. doi: 10.1038/nsmb.1644. Epub 2009 Aug 2.


Coupling of zygotic transcription to mitotic control at the Drosophila mid-blastula transition.

Lu X, Li JM, Elemento O, Tavazoie S, Wieschaus EF.

Development. 2009 Jun;136(12):2101-10. doi: 10.1242/dev.034421.


Buffering of segmental and chromosomal aneuploidies in Drosophila melanogaster.

Stenberg P, Lundberg LE, Johansson AM, Rydén P, Svensson MJ, Larsson J.

PLoS Genet. 2009 May;5(5):e1000465. doi: 10.1371/journal.pgen.1000465. Epub 2009 May 1.


Drosophila dosage compensation: a complex voyage to the X chromosome.

Gelbart ME, Kuroda MI.

Development. 2009 May;136(9):1399-410. doi: 10.1242/dev.029645. Review.


TopHat: discovering splice junctions with RNA-Seq.

Trapnell C, Pachter L, Salzberg SL.

Bioinformatics. 2009 May 1;25(9):1105-11. doi: 10.1093/bioinformatics/btp120. Epub 2009 Mar 16.


Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Langmead B, Trapnell C, Pop M, Salzberg SL.

Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4.


Pre-mRNA processing reaches back to transcription and ahead to translation.

Moore MJ, Proudfoot NJ.

Cell. 2009 Feb 20;136(4):688-700. doi: 10.1016/j.cell.2009.02.001. Review.


An essential role for the RNA-binding protein Smaug during the Drosophila maternal-to-zygotic transition.

Benoit B, He CH, Zhang F, Votruba SM, Tadros W, Westwood JT, Smibert CA, Lipshitz HD, Theurkauf WE.

Development. 2009 Mar;136(6):923-32. doi: 10.1242/dev.031815.


FlyBase: enhancing Drosophila Gene Ontology annotations.

Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, Marygold S, Millburn G, Osumi-Sutherland D, Schroeder A, Seal R, Zhang H; FlyBase Consortium.

Nucleic Acids Res. 2009 Jan;37(Database issue):D555-9. doi: 10.1093/nar/gkn788. Epub 2008 Oct 23.


A genomewide survey argues that every zygotic gene product is dispensable for the initiation of somatic homolog pairing in Drosophila.

Bateman JR, Wu CT.

Genetics. 2008 Nov;180(3):1329-42. doi: 10.1534/genetics.108.094862. Epub 2008 Sep 14.


Shadow enhancers as a source of evolutionary novelty.

Hong JW, Hendrix DA, Levine MS.

Science. 2008 Sep 5;321(5894):1314. doi: 10.1126/science.1160631. No abstract available.


Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function.

Lécuyer E, Yoshida H, Parthasarathy N, Alm C, Babak T, Cerovina T, Hughes TR, Tomancak P, Krause HM.

Cell. 2007 Oct 5;131(1):174-87.


Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo.

De Renzis S, Elemento O, Tavazoie S, Wieschaus EF.

PLoS Biol. 2007 May;5(5):e117. Erratum in: PLoS Biol. 2007 Aug;5(8):e213. PLoS Biol. 2007 Jul;5(7):e195.


Dosage compensation goes global.

Zhang Y, Oliver B.

Curr Opin Genet Dev. 2007 Apr;17(2):113-20. Epub 2007 Feb 20. Review.


The Relation of Repeats to Position Effect in Drosophila Melanogaster.

Lewis EB.

Genetics. 1945 Mar;30(2):137-66. No abstract available.

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