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Items: 14

1.

A fast and automated solution for accurately resolving protein domain architectures.

Yeats C, Redfern OC, Orengo C.

Bioinformatics. 2010 Mar 15;26(6):745-51. doi: 10.1093/bioinformatics/btq034. Epub 2010 Jan 29.

PMID:
20118117
2.

Upcoming challenges for multiple sequence alignment methods in the high-throughput era.

Kemena C, Notredame C.

Bioinformatics. 2009 Oct 1;25(19):2455-65. doi: 10.1093/bioinformatics/btp452. Epub 2009 Jul 30. Review.

3.

RANKPROP: a web server for protein remote homology detection.

Melvin I, Weston J, Leslie C, Noble WS.

Bioinformatics. 2009 Jan 1;25(1):121-2. doi: 10.1093/bioinformatics/btn567. Epub 2008 Nov 6.

4.

The global trace graph, a novel paradigm for searching protein sequence databases.

Heger A, Mallick S, Wilton C, Holm L.

Bioinformatics. 2007 Sep 15;23(18):2361-7. Epub 2007 Sep 6.

PMID:
17823134
5.

The HHpred interactive server for protein homology detection and structure prediction.

Söding J, Biegert A, Lupas AN.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W244-8.

6.

ADDA: a domain database with global coverage of the protein universe.

Heger A, Wilton CA, Sivakumar A, Holm L.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D188-91.

7.

Protein ranking: from local to global structure in the protein similarity network.

Weston J, Elisseeff A, Zhou D, Leslie CS, Noble WS.

Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6559-63. Epub 2004 Apr 15.

8.
9.

Comparison of sequence profiles. Strategies for structural predictions using sequence information.

Rychlewski L, Jaroszewski L, Li W, Godzik A.

Protein Sci. 2000 Feb;9(2):232-41.

10.

The ASTRAL compendium for protein structure and sequence analysis.

Brenner SE, Koehl P, Levitt M.

Nucleic Acids Res. 2000 Jan 1;28(1):254-6.

11.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ.

Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. Review.

12.

SCOP: a structural classification of proteins database for the investigation of sequences and structures.

Murzin AG, Brenner SE, Hubbard T, Chothia C.

J Mol Biol. 1995 Apr 7;247(4):536-40.

PMID:
7723011
13.

Identification of common molecular subsequences.

Smith TF, Waterman MS.

J Mol Biol. 1981 Mar 25;147(1):195-7. No abstract available.

PMID:
7265238
14.

Basic local alignment search tool.

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ.

J Mol Biol. 1990 Oct 5;215(3):403-10.

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