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Items: 1 to 20 of 36

1.

lncRNAdb: a reference database for long noncoding RNAs.

Amaral PP, Clark MB, Gascoigne DK, Dinger ME, Mattick JS.

Nucleic Acids Res. 2011 Jan;39(Database issue):D146-51. doi: 10.1093/nar/gkq1138. Epub 2010 Nov 25.

2.

miRBase: integrating microRNA annotation and deep-sequencing data.

Kozomara A, Griffiths-Jones S.

Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7. doi: 10.1093/nar/gkq1027. Epub 2010 Oct 30.

3.

genenames.org: the HGNC resources in 2011.

Seal RL, Gordon SM, Lush MJ, Wright MW, Bruford EA.

Nucleic Acids Res. 2011 Jan;39(Database issue):D514-9. doi: 10.1093/nar/gkq892. Epub 2010 Oct 6.

4.

Of proteins and RNA: the RNase P/MRP family.

Esakova O, Krasilnikov AS.

RNA. 2010 Sep;16(9):1725-47. doi: 10.1261/rna.2214510. Epub 2010 Jul 13. Review.

5.

Mining mammalian transcript data for functional long non-coding RNAs.

Khachane AN, Harrison PM.

PLoS One. 2010 Apr 23;5(4):e10316. doi: 10.1371/journal.pone.0010316.

6.

Non-coding RNAs: regulators of disease.

Taft RJ, Pang KC, Mercer TR, Dinger M, Mattick JS.

J Pathol. 2010 Jan;220(2):126-39. doi: 10.1002/path.2638. Review.

PMID:
19882673
7.

Spliceosome structure: piece by piece.

Ritchie DB, Schellenberg MJ, MacMillan AM.

Biochim Biophys Acta. 2009 Sep-Oct;1789(9-10):624-33. doi: 10.1016/j.bbagrm.2009.08.010. Epub 2009 Sep 3. Review.

PMID:
19733268
8.

Regulatory roles of natural antisense transcripts.

Faghihi MA, Wahlestedt C.

Nat Rev Mol Cell Biol. 2009 Sep;10(9):637-43. doi: 10.1038/nrm2738. Epub 2009 Jul 29. Review.

9.

Evolution of vault RNAs.

Stadler PF, Chen JJ, Hackermüller J, Hoffmann S, Horn F, Khaitovich P, Kretzschmar AK, Mosig A, Prohaska SJ, Qi X, Schutt K, Ullmann K.

Mol Biol Evol. 2009 Sep;26(9):1975-91. doi: 10.1093/molbev/msp112. Epub 2009 Jun 2.

PMID:
19491402
10.

Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss.

Mencía A, Modamio-Høybjør S, Redshaw N, Morín M, Mayo-Merino F, Olavarrieta L, Aguirre LA, del Castillo I, Steel KP, Dalmay T, Moreno F, Moreno-Pelayo MA.

Nat Genet. 2009 May;41(5):609-13. doi: 10.1038/ng.355. Epub 2009 Apr 12.

PMID:
19363479
11.

MicroRNAs: target recognition and regulatory functions.

Bartel DP.

Cell. 2009 Jan 23;136(2):215-33. doi: 10.1016/j.cell.2009.01.002. Review.

12.

GtRNAdb: a database of transfer RNA genes detected in genomic sequence.

Chan PP, Lowe TM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D93-7. doi: 10.1093/nar/gkn787. Epub 2008 Nov 4.

13.

Structural dynamics of the ribosome.

Korostelev A, Ermolenko DN, Noller HF.

Curr Opin Chem Biol. 2008 Dec;12(6):674-83. doi: 10.1016/j.cbpa.2008.08.037. Epub 2008 Oct 9. Review.

14.

U7 snRNAs: a computational survey.

Marz M, Mosig A, Stadler BM, Stadler PF.

Genomics Proteomics Bioinformatics. 2007 Dec;5(3-4):187-95. doi: 10.1016/S1672-0229(08)60006-6.

15.

The vertebrate genome annotation (Vega) database.

Wilming LG, Gilbert JG, Howe K, Trevanion S, Hubbard T, Harrow JL.

Nucleic Acids Res. 2008 Jan;36(Database issue):D753-60. Epub 2007 Nov 14.

16.

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.

Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO.

Nucleic Acids Res. 2007;35(21):7188-96. Epub 2007 Oct 18.

17.

piRNABank: a web resource on classified and clustered Piwi-interacting RNAs.

Sai Lakshmi S, Agrawal S.

Nucleic Acids Res. 2008 Jan;36(Database issue):D173-7. Epub 2007 Sep 18.

18.

Mamit-tRNA, a database of mammalian mitochondrial tRNA primary and secondary structures.

Pütz J, Dupuis B, Sissler M, Florentz C.

RNA. 2007 Aug;13(8):1184-90. Epub 2007 Jun 21.

19.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaöz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute, Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrímsdóttir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ.

Nature. 2007 Jun 14;447(7146):799-816.

20.

piRNAs in the germ line.

Lin H.

Science. 2007 Apr 20;316(5823):397. Review.

PMID:
17446387

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