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Items: 1 to 20 of 54

1.

Copy number variation and transposable elements feature in recent, ongoing adaptation at the Cyp6g1 locus.

Schmidt JM, Good RT, Appleton B, Sherrard J, Raymant GC, Bogwitz MR, Martin J, Daborn PJ, Goddard ME, Batterham P, Robin C.

PLoS Genet. 2010 Jun 24;6(6):e1000998. doi: 10.1371/journal.pgen.1000998.

2.
3.

On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila.

Parsch J, Novozhilov S, Saminadin-Peter SS, Wong KM, Andolfatto P.

Mol Biol Evol. 2010 Jun;27(6):1226-34. doi: 10.1093/molbev/msq046. Epub 2010 Feb 11.

4.

The UCSC Genome Browser database: update 2010.

Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, Fujita PA, Diekhans M, Smith KE, Rosenbloom KR, Raney BJ, Pohl A, Pheasant M, Meyer LR, Learned K, Hsu F, Hillman-Jackson J, Harte RA, Giardine B, Dreszer TR, Clawson H, Barber GP, Haussler D, Kent WJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D613-9. doi: 10.1093/nar/gkp939. Epub 2009 Nov 11.

5.

The transcriptional response of Drosophila melanogaster to infection with the sigma virus (Rhabdoviridae).

Carpenter J, Hutter S, Baines JF, Roller J, Saminadin-Peter SS, Parsch J, Jiggins FM.

PLoS One. 2009 Aug 31;4(8):e6838. doi: 10.1371/journal.pone.0006838.

6.

Gene expression during Drosophila melanogaster egg development before and after reproductive diapause.

Baker DA, Russell S.

BMC Genomics. 2009 May 24;10:242. doi: 10.1186/1471-2164-10-242.

7.

Control of metabolic homeostasis by stress signaling is mediated by the lipocalin NLaz.

Hull-Thompson J, Muffat J, Sanchez D, Walker DW, Benzer S, Ganfornina MD, Jasper H.

PLoS Genet. 2009 Apr;5(4):e1000460. doi: 10.1371/journal.pgen.1000460. Epub 2009 Apr 24.

8.

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.

Librado P, Rozas J.

Bioinformatics. 2009 Jun 1;25(11):1451-2. doi: 10.1093/bioinformatics/btp187. Epub 2009 Apr 3.

PMID:
19346325
9.

Systems genetics of complex traits in Drosophila melanogaster.

Ayroles JF, Carbone MA, Stone EA, Jordan KW, Lyman RF, Magwire MM, Rollmann SM, Duncan LH, Lawrence F, Anholt RR, Mackay TF.

Nat Genet. 2009 Mar;41(3):299-307. doi: 10.1038/ng.332. Epub 2009 Feb 22.

10.

The influence of demography and weak selection on the McDonald-Kreitman test: an empirical study in Drosophila.

Parsch J, Zhang Z, Baines JF.

Mol Biol Evol. 2009 Mar;26(3):691-8. doi: 10.1093/molbev/msn297. Epub 2009 Jan 6.

PMID:
19126864
11.

Contrasting patterns of natural variation in global Drosophila melanogaster populations.

Nunes MD, Neumeier H, Schlötterer C.

Mol Ecol. 2008 Oct;17(20):4470-9. doi: 10.1111/j.1365-294X.2008.03944.x.

PMID:
18986493
12.

GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis.

Zheng Q, Wang XJ.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W358-63. doi: 10.1093/nar/gkn276. Epub 2008 May 16.

13.

Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions.

Wang HY, Fu Y, McPeek MS, Lu X, Nuzhdin S, Xu A, Lu J, Wu ML, Wu CI.

Proc Natl Acad Sci U S A. 2008 Apr 29;105(17):6362-7. doi: 10.1073/pnas.0711774105. Epub 2008 Apr 22.

14.

Opposing effects of dietary protein and sugar regulate a transcriptional target of Drosophila insulin-like peptide signaling.

Buch S, Melcher C, Bauer M, Katzenberger J, Pankratz MJ.

Cell Metab. 2008 Apr;7(4):321-32. doi: 10.1016/j.cmet.2008.02.012.

15.

Gene expression variation in African and European populations of Drosophila melanogaster.

Hutter S, Saminadin-Peter SS, Stephan W, Parsch J.

Genome Biol. 2008 Jan 21;9(1):R12. doi: 10.1186/gb-2008-9-1-r12.

16.

Polymorphic Y chromosomes harbor cryptic variation with manifold functional consequences.

Lemos B, Araripe LO, Hartl DL.

Science. 2008 Jan 4;319(5859):91-3. doi: 10.1126/science.1148861.

17.

Variable sexually dimorphic gene expression in laboratory strains of Drosophila melanogaster.

Baker DA, Meadows LA, Wang J, Dow JA, Russell S.

BMC Genomics. 2007 Dec 10;8:454.

18.

Simpler mode of inheritance of transcriptional variation in male Drosophila melanogaster.

Wayne ML, Telonis-Scott M, Bono LM, Harshman L, Kopp A, Nuzhdin SV, McIntyre LM.

Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18577-82. Epub 2007 Nov 14.

19.

The evolution of sex-biased genes and sex-biased gene expression.

Ellegren H, Parsch J.

Nat Rev Genet. 2007 Sep;8(9):689-98. Epub 2007 Aug 7. Review.

PMID:
17680007
20.

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